DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gdap2 and POA1

DIOPT Version :9

Sequence 1:NP_724597.1 Gene:Gdap2 / 59173 FlyBaseID:FBgn0042135 Length:540 Species:Drosophila melanogaster
Sequence 2:NP_009578.1 Gene:POA1 / 852310 SGDID:S000000226 Length:177 Species:Saccharomyces cerevisiae


Alignment Length:140 Identity:31/140 - (22%)
Similarity:48/140 - (34%) Gaps:44/140 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 TWGG--SQKTDTRLPIT--DY--------SNLGG-----PRHNRSPFPLCKDVNNRFVIWDGDMT 77
            :|||  :.:...|.|..  ||        |||.|     |.:..|...:|....:.|    |..:
Yeast    30 SWGGGIAYQLALRYPKAEKDYVEVCEKYGSNLLGKCILLPSYENSDLLICCLFTSSF----GGSS 90

  Fly    78 TLEVDAITN--------------TSDETLTESNSISERIFAVAGNQLREELSTTVKECRTGDVRI 128
            ..|..:|.|              ..|:|.|..:||        |:.|...:...:.|.:....:|
Yeast    91 HGEKQSILNYTKLALDKLKTFREAKDKTRTSEDSI--------GDYLNGHIKYPIGEYKLEMPQI 147

  Fly   129 TRG-YNLPAK 137
            ..| :.:|.|
Yeast   148 NSGIFGVPWK 157

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gdap2NP_724597.1 YmdB 67..234 CDD:225021 17/86 (20%)
Macro_GDAP2_like 67..207 CDD:239233 17/86 (20%)
CRAL_TRIO_2 393..518 CDD:290435
POA1NP_009578.1 YmdB 1..174 CDD:225021 31/140 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2110
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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