DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gdap2 and AT1G69340

DIOPT Version :9

Sequence 1:NP_724597.1 Gene:Gdap2 / 59173 FlyBaseID:FBgn0042135 Length:540 Species:Drosophila melanogaster
Sequence 2:NP_001323191.1 Gene:AT1G69340 / 843266 AraportID:AT1G69340 Length:562 Species:Arabidopsis thaliana


Alignment Length:551 Identity:174/551 - (31%)
Similarity:279/551 - (50%) Gaps:60/551 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 SSSSSCPVKLDNLATWGGSQKTDTRLPITDYSNLGGPRHNR---------------------SPF 59
            :.|....|.||.:..|   ...:.|..:.|  ..|.|.|:.                     |.|
plant    18 TESGDYVVTLDQIPRW---SDVEQRSSLED--ETGDPEHSNPRYANPLASSSEAGSSGNGMVSKF 77

  Fly    60 PLCKDVNNRFVIWDGDMTTLEVDAITNTSDETLTESNSISERIFAVAGNQLREELSTTVKECRTG 124
            |:..::|:|..:|.|:...|||||:.|:::|.|.|::| |..:...||..|.|:.: |:..||||
plant    78 PVDHEINSRIYLWRGEPWNLEVDAVVNSTNENLDEAHS-SPGLHVAAGPGLAEQCA-TLGGCRTG 140

  Fly   125 DVRITRGYNLPAKYVLHTVAPAYREKFKTAAENTLHCCYRNVLCKAKELNLHTIALCNISAHQKS 189
            ..::|..|:|||:.|:|||.|.|..|:.|||||.|..|||:.|....:..|.:|||..|....|:
plant   141 MAKVTNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIDSGLQSIALGCIYTEAKN 205

  Fly   190 FPADVAAHIALRTIRRYLD--KCTLQVVILC-VGSSERGTYEVLAPLYFPRDQLEERSALWQLPK 251
            :|.:.|||:|:||:||:|:  |..:..|:.| ..||:...|:.|.|||||||:.||..|:.:||.
plant   206 YPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTSSDTEIYKRLLPLYFPRDEHEEEVAISKLPA 270

  Fly   252 DIGGEFGEPQHPDPDRQIRIIRN--PQHSVHMRHHLADDDSDVSPHDMEGNSSDLEYGARDMNGL 314
            |:|.|.||....:...:|:.:.|  |..|.              |..:|..|:||....|:.|  
plant   271 DVGDENGETVIDERKIRIQALPNKPPPRSF--------------PTPLERPSTDLTLLRRNSN-- 319

  Fly   315 SLNSYSSGLQAQLQRDLD----RQHLLSDRPRTGV-YENVISEG------VEGIEHQERYERLLR 368
            .|:||.......|.:|.|    .|...:.:.::|. :..::..|      :...|....:.|.|.
plant   320 HLDSYLDPAFMSLIKDPDERRKEQWEKTAQAQSGFNFVKLLGFGDLGGPPLSAAEEYSLHSRYLA 384

  Fly   369 RAQVEDLTEVSGIGCLYQSGVDRLGRPVIVFCGKWFPAQNIDLEKALLYLIKLLDPIVKGDYVIS 433
            :|...:|:|::.:..:|:.|||..|.||:|..|..|..:.:|||:.:||:||..:|:::..|.|.
plant   385 KANSINLSEIAEMKIVYRGGVDTEGHPVMVVVGAHFLLRCLDLERFVLYVIKEFEPVIQKPYSIV 449

  Fly   434 YFHTLTSTNNYPSLHWLREVYSVLPYKYKKNLKAFYIVHPTFWTKMMTWWFTTFMAPAIKAKVHS 498
            |||:..|....|.|.|::.:..:|..|:::||:|.|::||||..|........|:...:..||..
plant   450 YFHSAASLQVQPDLGWMKRLEQILGRKHQRNLQAIYVLHPTFHLKATILTMQFFVDNVVWKKVVY 514

  Fly   499 LPGVEHLYSAITKDQLEIPAYITEYDMATNG 529
            ...:..|:..:.::||.||.::.::|:..||
plant   515 ADRLLQLFKYVPREQLTIPDFVFQHDLEVNG 545

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gdap2NP_724597.1 YmdB 67..234 CDD:225021 69/169 (41%)
Macro_GDAP2_like 67..207 CDD:239233 60/139 (43%)
CRAL_TRIO_2 393..518 CDD:290435 41/124 (33%)
AT1G69340NP_001323191.1 Macro_GDAP2-like 85..253 CDD:394876 69/169 (41%)
CRAL_TRIO_2 409..542 CDD:404584 43/132 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 89 1.000 Domainoid score I2680
eggNOG 1 0.900 - - E1_COG2110
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H7728
Inparanoid 1 1.050 256 1.000 Inparanoid score I997
OMA 1 1.010 - - QHG55405
OrthoDB 1 1.010 - - D937161at2759
OrthoFinder 1 1.000 - - FOG0007360
OrthoInspector 1 1.000 - - oto2898
orthoMCL 1 0.900 - - OOG6_105245
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X5478
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1211.780

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