DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gdap2 and Macrod2

DIOPT Version :9

Sequence 1:NP_724597.1 Gene:Gdap2 / 59173 FlyBaseID:FBgn0042135 Length:540 Species:Drosophila melanogaster
Sequence 2:XP_006500309.1 Gene:Macrod2 / 72899 MGIID:1920149 Length:476 Species:Mus musculus


Alignment Length:305 Identity:89/305 - (29%)
Similarity:135/305 - (44%) Gaps:33/305 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 VKLDNLATWGGSQKTDTRLPITDYSNLGGPRHNRSPFP-LCKDVNNRFVIWDGDMTTLEVDAITN 86
            |.|..:.:|....|:..:          ....|....| :.|.::.:..::.||:|.||||||.|
Mouse    35 VSLSTILSWKEEMKSKGQ----------NDEENTQEAPQMKKSLSEKVSLYRGDITLLEVDAIVN 89

  Fly    87 TSDETLTESNSISERIFAVAGNQLREELSTTVKECRTGDVRITRGYNLPAKYVLHTVAPAYREKF 151
            .::.:|.....:...|...||..|..| ...:..|.||..:||.||:||||||:|||.|..|...
Mouse    90 AANASLLGGGGVDGCIHRAAGPCLLAE-CRNLNGCETGHAKITCGYDLPAKYVIHTVGPIARGHI 153

  Fly   152 KTAAENTLHCCYRNVLCKAKELNLHTIALCNISAHQKSFPADVAAHIALRTIRRYLDKCTLQV-- 214
            ..:.:..|..||::.|...||.||.::|...||.....||.:.||.|||.||:.:|.|...:|  
Mouse   154 NGSHKEDLANCYQSSLKLVKENNLRSVAFPCISTGIYGFPNEPAAVIALGTIKEWLAKNHQEVDR 218

  Fly   215 VILCVGSSERGTYEVLAPLY-------FPRDQLEERSALWQLPKDIGGEFGEPQHPDPDRQIRII 272
            :|.||      ..||...:|       ||.|...|.:.. .:.:|..|.  ||:...|..:....
Mouse   219 IIFCV------FLEVDFKIYKKKMNEFFPVDDNNEGTDA-DMKEDSEGP--EPKGLSPPHKKSKA 274

  Fly   273 RNPQHSVHMRHHLADDDSDVSPHDMEGNSSD---LEYGARDMNGL 314
            :.|:.|.......:..:...:..:|||.|.:   |.:..|::.||
Mouse   275 KKPESSKDSSEDESGPEEKQTAEEMEGQSQEAGGLRFLLRNLLGL 319

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gdap2NP_724597.1 YmdB 67..234 CDD:225021 62/168 (37%)
Macro_GDAP2_like 67..207 CDD:239233 54/139 (39%)
CRAL_TRIO_2 393..518 CDD:290435
Macrod2XP_006500309.1 PRK00431 71..239 CDD:234759 63/174 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2110
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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