DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gdap2 and macroh2a2

DIOPT Version :10

Sequence 1:NP_724597.1 Gene:Gdap2 / 59173 FlyBaseID:FBgn0042135 Length:540 Species:Drosophila melanogaster
Sequence 2:NP_001020673.1 Gene:macroh2a2 / 558711 ZFINID:ZDB-GENE-050913-114 Length:367 Species:Danio rerio


Alignment Length:161 Identity:38/161 - (23%)
Similarity:68/161 - (42%) Gaps:24/161 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 TLEVDAITNTSDETLTESNSISERIFAVAGNQLREELSTTVKECR-------TGDVRITRGYNLP 135
            |::|:.|.|.::..:.....|...:....|....|    ||||.|       ...|.:::...:.
Zfish   204 TIKVEGIINPTNAEIDLKEGIGNALEKTGGKDFLE----TVKELRKSQGPLEVASVAVSQANGMA 264

  Fly   136 AKYVLHTVAPAY-REKFKTAAENTLHCCYRNVLCKAKELNLHTIALCNISAHQKSFPADVAAHIA 199
            |::::|...|.: .:|.:...|.|:    :|.|..|:|..|.::|..::.|.:..||...||.:.
Zfish   265 ARFIIHCHVPQWGSDKCEDQLEKTV----KNCLSAAEEKKLKSVAFPSLPAGRNGFPKQTAAQLI 325

  Fly   200 LRTIRRYLDKCTLQVVILCVGSSERGTYEVL 230
            |:.|..:....|.        ||.:..|.||
Zfish   326 LKAISNHFVSATT--------SSLKNIYFVL 348

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gdap2NP_724597.1 Macro_GDAP2-like 67..234 CDD:394876 38/161 (24%)
CRAL_TRIO_2 393..524 CDD:463965
macroh2a2NP_001020673.1 H2A 14..119 CDD:197711
Macro_H2A-like 173..363 CDD:394875 38/161 (24%)
Blue background indicates that the domain is not in the aligned region.

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