DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gdap2 and Macrod1

DIOPT Version :10

Sequence 1:NP_724597.1 Gene:Gdap2 / 59173 FlyBaseID:FBgn0042135 Length:540 Species:Drosophila melanogaster
Sequence 2:XP_006230739.1 Gene:Macrod1 / 246233 RGDID:628701 Length:334 Species:Rattus norvegicus


Alignment Length:259 Identity:77/259 - (29%)
Similarity:121/259 - (46%) Gaps:41/259 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 RLDTNSNVDFKAFESSSSS-----------CP--VKLDNLATWGGSQKTDTRLPITDYSNLGG-- 51
            ::|.:::.|:|..:|....           |.  :||..:..|..:.|           .|.|  
  Rat    84 KVDLSTSTDWKEAKSFLKGLSDKQREEHYFCKDFIKLKKIPMWKETAK-----------GLAGKV 137

  Fly    52 --PRHNRSPFPLCKDVNNRFVIWDGDMTTLEVDAITNTSDETLTESNSISERIFAVAGNQLREEL 114
              |::.:.     |.:|.:..::.||:|.||||||.|.::.:|.....:...|...||:.|.:| 
  Rat   138 ENPKYKKD-----KQLNEKISLFRGDITKLEVDAIVNAANNSLLGGGGVDGCIHRAAGSLLTDE- 196

  Fly   115 STTVKECRTGDVRITRGYNLPAKYVLHTVAP--AYREKFKTAAENTLHCCYRNVLCKAKELNLHT 177
            ..|::.|.||..:||.||.||||:|:|||.|  ..:.....|||  |..||.:.|....|..|.:
  Rat   197 CRTLQNCETGKAKITCGYRLPAKHVIHTVGPIAVGQPTASQAAE--LRSCYLSSLDLLLEHRLRS 259

  Fly   178 IALCNISAHQKSFPADVAAHIALRTIRRYLD--KCTLQVVILCVG-SSERGTYEVLAPLYFPRD 238
            :|...||.....:|.:.||.:.|.|:|.:|:  |..:..:|:||. ..:.|.|:...|.|||.|
  Rat   260 VAFPCISTGVFGYPNEEAAEVVLATLREWLEQHKDKVDRLIICVFLEKDEGIYQERLPHYFPVD 323

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gdap2NP_724597.1 Macro_GDAP2-like 67..234 CDD:394876 59/171 (35%)
CRAL_TRIO_2 393..524 CDD:463965
Macrod1XP_006230739.1 Macro_OAADPr_deacetylase 151..317 CDD:438955 58/168 (35%)
Blue background indicates that the domain is not in the aligned region.

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