DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Capr and Caprin2

DIOPT Version :9

Sequence 1:NP_001287107.1 Gene:Capr / 59172 FlyBaseID:FBgn0042134 Length:961 Species:Drosophila melanogaster
Sequence 2:XP_038964832.1 Gene:Caprin2 / 686779 RGDID:1593683 Length:1029 Species:Rattus norvegicus


Alignment Length:926 Identity:202/926 - (21%)
Similarity:321/926 - (34%) Gaps:310/926 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 SQTDLASSNNNGNAAKSKANAVSAAAVVPEPYNP-LKQLLVTIEHKIRNLEKRKTKLESYRAIQS 138
            ||.:......|..|.....:.:|:||...:.|.. :...|:.::|||||:||:|.|||.|:....
  Rat     6 SQVNHTQQGENQRALSPLQSTLSSAASPSQAYETYIDNGLICLKHKIRNIEKKKLKLEDYKDRLK 70

  Fly   139 SGKELSGDQASAVAKYDAVLANLEFARELAKHIQQQSKEAEKEQKKQARKDNLAKTIAETAKIRE 203
            :|::|:.||..||.||:.||.|||||:||.|.....|::..|.|||..|::::.|..||..|:|.
  Rat    71 NGEQLNPDQLEAVEKYEEVLHNLEFAKELQKTFSALSQDLLKAQKKAQRREHMLKLEAEKKKLRT 135

  Fly   204 VLIIQNVLNCFNDDQVRSDFLNGENGAKKLENTELELLEKFFIETQTRRPETADDVSFIATAQKS 268
            :|.||.||.....:.|:.||..|.|||..|.:.||:.|.||   ::...||..:.:|.....::|
  Rat   136 ILQIQYVLQNLTQEHVQKDFKGGLNGAMYLPSKELDYLIKF---SKLTCPERNESLSVEDQMEQS 197

  Fly   269 AELFYSTINARPKSFGEVSFEKLRSLFQQIQDSGYLDKYYLVPLAENAVANSTDSGTGSGDGESG 333
            :..|:..:....|:....:::.::.|..::..|||.:.   ||:..|                  
  Rat   198 SLYFWDLLEGSEKAVVGTTYKHVKDLLSKLLHSGYFES---VPVLRN------------------ 241

  Fly   334 DLLNDGSGELDAELPSEPSARNSL--------EEGLDKLHLGVQAEL------------------ 372
                  |.|...|:..:...|..|        .|.|.:|   ||.|:                  
  Rat   242 ------SKEKTEEMLMQSEKRKQLLKTESIKESESLKEL---VQPEIQPQEFLNRRYMTEVNFSR 297

  Fly   373 ---DQHQSYQQQQERPSHLL-------EP------------------------------QHQRAP 397
               ::.||::....|...||       ||                              |.:..|
  Rat   298 KQENEEQSWEADYARKPGLLKCWNTLPEPDGQEKKKESVESWESSLKSQEVSKPVVSFEQEKLRP 362

  Fly   398 SLEHQQNSMVQQVS-TQVYQAAPQA-----GGTTTPVHVLYAP-----APPAQQQPQQPPPHPHQ 451
            :|:.:|.   ||:| ..|.|..|::     |......:|...|     .|..:|.|::.||.   
  Rat   363 TLQEEQK---QQISMAPVSQWKPESPKSKVGSPQEEQNVQETPKPWVVQPQKEQDPKKLPPG--- 421

  Fly   452 LLSSPVNLQALQTGT---AAPPAQQQ---QP-----------HPTH------------------- 480
              |..|::|:.|:|:   ..|..::|   ||           :..|                   
  Rat   422 --SWAVSVQSEQSGSRSWTTPVCREQASVQPGTPVSWENNAENQKHSLVPQSQISLKSWGAASAG 484

  Fly   481 FAPNVRA------VEQNYFKQPPQHPQGPGIQAPQTPQQQQ---------------FMQHS---- 520
            ..||.:.      ||.....:|...|.......|:.|..::               |||.|    
  Rat   485 LLPNDKVPPRKLNVEPKDVPKPMPQPIDSSSPFPKDPALRKEKLQDLMTQIQGTCNFMQESVLDV 549

  Fly   521 ---------------RPLAEVLG----TGRFHFLQD-------------------------SEL- 540
                           .|::.|..    :.:..|||:                         ||. 
  Rat   550 DTPSSAIPSSQPPSASPVSAVSAEQNLSNQSDFLQEPSKASSPVTCSSNACLVTTDQASLGSETE 614

  Fly   541 ----DNPEALAPP-----------PPTNQGLVFEQQPQQPNHV---EEPTQAILTLTFTNQSFPS 587
                :.||.:|||           ||.::|  |:..|...:..   ..|.||:.|:...|...|.
  Rat   615 FMTSETPEMVAPPCKPASALASPNPPLSKG--FQLPPASGSSAAISTAPFQAMQTVFNVNAPLPP 677

  Fly   588 QQPQPQQQGP--------------QQQQQLFSPVLIHEQRQQPPQQ------------------- 619
            ::.|..::.|              |...|...|.:..||..|||:.                   
  Rat   678 RKEQAMKESPYSSGYSQSFTSSSTQTVSQCQLPAVHVEQTTQPPETAAGYHPDGTVQVSNGSLAF 742

  Fly   620 QPQPMLIMPRLPTQQPQQPAPQGIGMQAGDVTSG----------FSYE---------NAVVSYEQ 665
            .|.|..:.||     |.||.....|...|....|          .||:         :|......
  Rat   743 YPAPTSMFPR-----PAQPFISSRGALRGCSRGGRLLMNPYRSPGSYKGFDSYRGLPSASSGTYS 802

  Fly   666 QIQQQLKQQQQQQQQQQQNLQQLDEPSSVNS---SSSVGAGGDVENNEWHARNNDTNAAATAALT 727
            |:|.|.::.......|:.|.||..:.|..:|   ::|.....|........|:::|..:..:.: 
  Rat   803 QLQLQAREYPGTPYSQRDNFQQCYKRSGTSSGLQANSRAGWSDSSQVSSPERDSETFNSGDSGV- 866

  Fly   728 NVLKGETTQATPPAPP 743
                |::...||...|
  Rat   867 ----GDSRSMTPVDVP 878

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CaprNP_001287107.1 PRK12704 <109..>199 CDD:237177 40/89 (45%)
Caprin-1_dimer 187..305 CDD:408102 34/117 (29%)
Caprin2XP_038964832.1 PRK03918 <48..>366 CDD:235175 93/350 (27%)
Caprin-1_dimer 119..234 CDD:408102 34/117 (29%)
Caprin-1_C 528..837 CDD:403488 59/315 (19%)
C1q 901..1026 CDD:395310
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 77 1.000 Domainoid score I8654
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003943
OrthoInspector 1 1.000 - - otm46410
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR22922
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
66.100

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