DRSC/TRiP Functional Genomics Resources

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Protein Alignment Capr and caprin1b

DIOPT Version :9

Sequence 1:NP_001287107.1 Gene:Capr / 59172 FlyBaseID:FBgn0042134 Length:961 Species:Drosophila melanogaster
Sequence 2:NP_998233.1 Gene:caprin1b / 406341 ZFINID:ZDB-GENE-040426-2020 Length:695 Species:Danio rerio


Alignment Length:875 Identity:199/875 - (22%)
Similarity:328/875 - (37%) Gaps:241/875 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 ATTNG----QSNSSAAATADGSQTDLASSNNNGNAAKSKANAVSAAAVVPEPYNPLKQLLVTIEH 118
            :.|||    :|.|....:|.|:...:.:||.. ...:|:|               :||::|.:|.
Zfish     3 SATNGTRTLKSASPDLGSAPGAMNQITASNQL-TGTQSEA---------------MKQVMVVLEK 51

  Fly   119 KIRNLEKRKTKLESYRAIQSSGKELSGDQASAVAKYDAVLANLEFARELAKHIQQQSKEAEKEQK 183
            |:||:||:|:||:.|:|..|.|:.|:.||..|::||..|:.:|||.|||.|......:|.:|..|
Zfish    52 KVRNMEKKKSKLDDYQARSSKGERLNQDQLEALSKYQEVIHSLEFTRELQKSFLALGQEIQKTVK 116

  Fly   184 KQARKDNLAKTIAETAKIREVLIIQNVLNCFNDDQVRSDFLNGENGAKKLENTELELLEKFFIET 248
            |.||::.|.:..:|..:::.||.:|..|:...|:.||.:.|.|:.....|...:|..|::|:   
Zfish   117 KAARREQLQREESEQKRLKRVLELQFALDRLGDESVRQELLQGDGETSLLTEGDLTSLDEFY--- 178

  Fly   249 QTRRPETADDVSFIATAQKSAELFYSTINARPKSFGEVSFEKLRSLFQQIQDSGYLDKYYLVPLA 313
            :...||...::......|::::..:..:..:.|.....:::.|....:::..|||.|:   |...
Zfish   179 KLVGPERDQNIRLTDQYQEASQHLWELLEGKDKPVAGTTYKALNETLERVLQSGYFDR---VQAH 240

  Fly   314 ENAVA----NSTDSGTGSGDGESGDLLND-GSGELDAELPSEPSARNSLEEGLDKLHLGVQAELD 373
            :|.|.    ...:........|..:..:| ..||:..|.| ||....:.|        .|..:..
Zfish   241 QNGVCVEEEEVEEQAAPVEAPEPEEQPHDTAEGEITEEYP-EPIPIETTE--------FVNRQFV 296

  Fly   374 QHQSYQ--QQQERPSHLLEPQHQRAPSLEHQQNSMVQQVSTQVYQAAPQAGGTTTPVHVLYAPAP 436
            ...:|.  ::::|....:||:         ..||::|.|     ||||                 
Zfish   297 SESTYSTGEKEQREDWSMEPE---------VVNSILQPV-----QAAP----------------- 330

  Fly   437 PAQQQPQQPPPHPHQLLSSPVNLQALQTGTAAPPAQ---QQQPHPTHFAPNVRAVEQNYFKQPPQ 498
                .|..|.|||            |.|.|..||:.   :||            |.|:...|   
Zfish   331 ----IPVVPEPHP------------LPTVTPTPPSDPVCRQQ------------VVQDLMAQ--- 364

  Fly   499 HPQGPGIQAPQTPQQQQFMQHSRPLAEVLGTGRFHFLQDSELD------NPEALAPPP--PTNQG 555
             .|||                            ::|:|||.||      :|..::..|  |.:  
Zfish   365 -MQGP----------------------------YNFMQDSMLDFDGQSLDPAIVSAQPMKPVS-- 398

  Fly   556 LVFEQQPQ--QPNHVE-------------EPTQAILTLTFTNQSFPSQQP---QPQQQGPQQQQQ 602
              .|..|.  ||.|.|             |||| |..::.:.::|.:..|   .|....|:.|..
Zfish   399 --MEMPPMVCQPAHPETHLAQPPAVGVQPEPTQ-IPMVSPSPETFSTPPPMYQSPHTADPRPQTG 460

  Fly   603 LFSPVLIHEQRQQP-PQQQPQPMLIMPRLPTQQPQQPA-PQGIGMQAGDVTSGFSYENAVVSYEQ 665
            ...|:    |...| .:|.|....:.|...||...:|. ..||.:.|...               
Zfish   461 SIDPI----QASMPLTEQTPSSATLPPASQTQVIPKPLHSSGINVNAAPF--------------- 506

  Fly   666 QIQQQLKQQQQQQQQQQQNLQQLDEP-SSVNSSSSVGAGGDVENNEWHARNNDTNAAATAALTNV 729
                          |..|.:..|:.| ...|.:.|:......:|:.....|:.|.          
Zfish   507 --------------QSMQTVFNLNAPVPPANDTDSIKQASQYQNSYSQGFNSQTQ---------- 547

  Fly   730 LKGETTQATPPAPPTKWSSEMNAMSSAASNGSSNTSHKQEWATPRDHSTGGGNSGYADNNESNNH 794
            |..|.|.    .||.:..:.:.|..|...:..::.:|:    .......|...:|:....:|   
Zfish   548 LPVEQTD----LPPEQLQAVVGAFLSQDQSLQNSAAHQ----VMSQQQAGVQGNGFGRQAQS--- 601

  Fly   795 WNNSQGDGRRNSGNYQRRGGDRDNRDRDQGGRGDERRNGGDRGNYRSRQ--YGNSSNTN-GRNSG 856
            :.||:|         ..|||.|::|....|.||.   :.|.||.|...:  :.||:|.. |:...
Zfish   602 FYNSRG---------MSRGGPRNSRGIINGYRGP---SNGFRGGYEGYRPPFSNSANPGYGQTQF 654

  Fly   857 NSSGVYFRNNESGNGGGNNYYQNGGGGGGT 886
            ::...|..:|...:|...||.:  |.|.||
Zfish   655 STPRDYSGSNYQRDGYQPNYKR--GSGQGT 682

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CaprNP_001287107.1 PRK12704 <109..>199 CDD:237177 38/89 (43%)
Caprin-1_dimer 187..305 CDD:408102 24/117 (21%)
caprin1bNP_998233.1 Caprin-1_C 366..679 CDD:289087 85/413 (21%)
Cyano_gly_rpt <560..638 CDD:275087 21/96 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170595745
Domainoid 1 1.000 79 1.000 Domainoid score I8618
eggNOG 1 0.900 - - E1_28MXV
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 136 1.000 Inparanoid score I4539
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003943
OrthoInspector 1 1.000 - - otm24751
orthoMCL 1 0.900 - - OOG6_108969
Panther 1 1.100 - - LDO PTHR22922
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4496
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1211.870

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