DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Capr and Caprin1

DIOPT Version :9

Sequence 1:NP_001287107.1 Gene:Capr / 59172 FlyBaseID:FBgn0042134 Length:961 Species:Drosophila melanogaster
Sequence 2:NP_001012185.2 Gene:Caprin1 / 362173 RGDID:1305707 Length:707 Species:Rattus norvegicus


Alignment Length:858 Identity:212/858 - (24%)
Similarity:317/858 - (36%) Gaps:230/858 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 IPGTAVAAGAGVATT-----NGQSNSSAAATADGSQTDLASSNNNGNAAKSKANAVSAAAVVPEP 105
            :|.....:|:|..::     :|.|.|.|||.|              .|..|:..|....||..| 
  Rat     1 MPSATSHSGSGSKSSGPPPPSGSSGSEAAAGA--------------AAPASQHPATGTGAVQTE- 50

  Fly   106 YNPLKQLLVTIEHKIRNLEKRKTKLESYRAIQSSGKELSGDQASAVAKYDAVLANLEFARELAKH 170
              .:||:|..|:.|:|||||:|.||:.|:...:.|:.|:.||..||:||..|..|||||:||.:.
  Rat    51 --AMKQILGVIDKKLRNLEKKKGKLDDYQERMNKGERLNQDQLDAVSKYQEVTNNLEFAKELQRS 113

  Fly   171 IQQQSKEAEKEQKKQARKDNLAKTIAETAKIREVLIIQNVLNCFNDDQVRSDFLNGENGAKKLEN 235
            ....|::.:|..||.||::.|.:..||..:::.||.:|.||:...||.||:|...|.:|...|..
  Rat   114 FMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDKLGDDDVRTDLKQGLSGVPILSE 178

  Fly   236 TELELLEKFFIETQTRRPETADDVSFIATAQ-KSAEL-FYSTINARPKSFGEVSFEKLRSLFQQI 298
            .||.||::|:......|     |:|.....| :.|.: .:..:..:.|.....:::.|:.:.:::
  Rat   179 EELSLLDEFYKLVDPER-----DMSLRLNEQYEHASIHLWDLLEGKEKPVCGTTYKALKEIVERV 238

  Fly   299 QDSGYLDKYY-------------LVPLAENAVANS----TDSGTGSGDGESGDLLNDGSGELDAE 346
            ..|.|.|..:             ..|:.|:.||.:    |:..|...:.||.:.:|       .:
  Rat   239 FQSNYFDSTHNHQNGLCEEEEAASAPIVEDQVAEAEPEPTEEYTEQSEVESTEYVN-------RQ 296

  Fly   347 LPSEPSARNSLEEGLDKLHLGVQAELDQHQSYQQQQERPS------HLLEPQHQRAPSLEHQQNS 405
            ..:|....:..:|.:|:..:   ..::...|.|||.:..|      |.|.|..|..|.:..|:  
  Rat   297 FMAETQFSSGEKEQVDEWAV---ETVEVVNSLQQQPQAASPSVPEPHSLTPVAQSDPLVRRQR-- 356

  Fly   406 MVQQVSTQV---YQAAPQA-----GGTTTPVHVLYAPAPPAQ--QQPQQPPPHPH---QLLSS-- 455
             ||.:..|:   |.....:     ..|..|..|...|..|.|  ..||...|..|   :|..|  
  Rat   357 -VQDLMAQMQGPYNFIQDSMLDFENQTLDPAIVSAQPMNPTQNMDMPQLVCPQVHSESRLAQSNQ 420

  Fly   456 -PVNLQALQTG---------TAAPPAQQQQPHPTHFAPNVRAVEQNYFKQPPQHPQGP-GIQAPQ 509
             ||..:|.|..         ||:.|..|    |:|      |.||...|:|....|.. .:...|
  Rat   421 VPVQPEATQVPLVSSTSEGYTASQPLYQ----PSH------AAEQRPQKEPIDQIQATISLNTEQ 475

  Fly   510 TPQQQQFMQHSRPLAEVLGTGRFHFLQDSELDNPEAL------------APPPPTNQGLVFEQQP 562
            |.........|:|  :|...|....|..|.: |..|.            ||.||.|:....:||.
  Rat   476 TTASSSLPAASQP--QVFQAGASKPLHSSGI-NVNAAPFQSMQTVFNMNAPVPPVNEPETLKQQS 537

  Fly   563 Q-QPNHVEEPTQAILTLTFTNQSFPSQQPQPQQQGPQQQQQLFSPVLIHEQRQQPPQQQPQPMLI 626
            | |.::              |||| |.||...:|...||.||.:.|..:...|..|.|.|     
  Rat   538 QYQASY--------------NQSF-SSQPHQVEQTELQQDQLQTVVGTYHGSQDQPHQVP----- 582

  Fly   627 MPRLPTQQPQQPAPQGIGMQAGDVTSGFSYENAVVSYEQQIQQQLKQQQQQQQQQQQNLQQLDEP 691
                  ...|||..|..|..    .|...|.|:                                
  Rat   583 ------GNHQQPPQQSTGFP----RSSQPYYNS-------------------------------- 605

  Fly   692 SSVNSSSSVGAGGDVENNEWHARNNDTNAAATAALTNVLKGETTQATPPAPPTKWSSEMNAMSSA 756
            ..|:...|.||.|                     |.|..:|         |...:....:...|:
  Rat   606 RGVSRGGSRGARG---------------------LMNGYRG---------PANGFRGGYDGYRSS 640

  Fly   757 ASNGSSNTSHKQEWATPRDHSTGGGNSGYADNNESNNHWNNSQGDGRRNSGNYQRRGGDRDNRDR 821
            .||..::...:.::..|||:      |||             |.||.:.  |::|..|....|..
  Rat   641 FSNTPNSGYTQSQFNAPRDY------SGY-------------QRDGYQQ--NFKRGSGQSGPRGA 684

  Fly   822 DQGGRGDERRNGG 834
            .:|..|..|.|.|
  Rat   685 PRGRGGPPRPNRG 697

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CaprNP_001287107.1 PRK12704 <109..>199 CDD:237177 39/89 (44%)
Caprin-1_dimer 187..305 CDD:408102 31/119 (26%)
Caprin1NP_001012185.2 Caprin-1_dimer 130..245 CDD:408102 31/119 (26%)
Caprin-1_C 357..679 CDD:403488 100/447 (22%)
G3BP1-binding. {ECO:0000250} 358..379 3/20 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166353608
Domainoid 1 1.000 77 1.000 Domainoid score I8654
eggNOG 1 0.900 - - E1_28MXV
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 141 1.000 Inparanoid score I4410
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003943
OrthoInspector 1 1.000 - - otm46410
orthoMCL 1 0.900 - - OOG6_108969
Panther 1 1.100 - - LDO PTHR22922
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1211.750

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