DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18788 and F56A4.10

DIOPT Version :9

Sequence 1:NP_652665.3 Gene:CG18788 / 59164 FlyBaseID:FBgn0042126 Length:540 Species:Drosophila melanogaster
Sequence 2:NP_001303739.1 Gene:F56A4.10 / 186353 WormBaseID:WBGene00018918 Length:470 Species:Caenorhabditis elegans


Alignment Length:581 Identity:109/581 - (18%)
Similarity:187/581 - (32%) Gaps:223/581 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 PAVEQKLSDIF-----IYLEVRQRWVLCCFTFLAIINAYTMRLCLDCTLNRIILECGGHRVDNVP 62
            |.|.:..|.:|     ||:.|   ..|.|.||:. :|..|:...:.|             :|::.
 Worm    20 PQVRKTSSFVFWNRTRIYVMV---LTLICLTFMQ-MNTLTLNFTVIC-------------MDDIV 67

  Fly    63 QVLNPKALPNWRIELAMALNHTEYQL------RSRLKAGKE-------QPDLNQISAKGTRDREP 114
            :            :..|..|.||...      :|.|.:|..       .|.:.|||:.|.|:   
 Worm    68 E------------DFHMFHNSTETHWFERSTEKSLLFSGVAIGGLIGLVPSVPQISSIGLRN--- 117

  Fly   115 AGEKRPGQEDSQERLSCSEQWPRQTQSLVVMAFYAGYVLSHVPGGRLAERYGGKWVLSAAILTSA 179
                                    ||::      :|::                         |.
 Worm   118 ------------------------TQTI------SGFI-------------------------SG 127

  Fly   180 VLTLLTPTAVRQGGLYALVAVRLLVGICEGPCFPAVCALLAQWVPEQERGMLASCVLSGGEIGIT 244
            :.:.|.|.|| ..|.|.....|:|.||.....|.||..:...|.|:.|.....|.:....::...
 Worm   128 LGSFLFPLAV-SVGFYTSFLCRVLQGIGAAVLFTAVGVVPGVWAPKSEANTFMSILACAFQLSNV 191

  Fly   245 MVQLVSGLLI-AEQDWPVFFYLVGGGAVAWFLGFTLVCYSTPD----HCPFIQSEEREYIRCNTS 304
            :...|||||. :...|...:|:  .||:.:.| :|:..::..|    |....|.|.|:       
 Worm   192 ICMPVSGLLCESAVGWRSIYYI--SGAITFVL-YTVFWFTYTDDPKLHRNVSQKELRK------- 246

  Fly   305 NSFLLTTGREREEMDGEDGYEGEDREHRREVEATCNTAPWRSMLNSTPLWALVS-TSMQQEFQQK 368
                ::||:                     ||......|:.::  ||....::| .|:   |...
 Worm   247 ----ISTGK---------------------VEKIKEPVPYFAV--STDPTVIISWISL---FGGN 281

  Fly   369 L---------PQELQIALEEVRARGTSFSELTTIIETIAPSVGNWIASLTTGRLSDV-------- 416
            :         |..|:..|:        |....|...|..|.:.:.||..:.||:||.        
 Worm   282 MGFYVLCIYGPTYLREVLK--------FDVKETGFLTALPFILSAIAKFSAGRISDKLTGLSERA 338

  Fly   417 ------------LIEQQILTRTQTRRLMSWLVF----------LCGSMYMLQIKMSGARIWSVLG 459
                        |:...::....|.|:::.:.|          :.|.:..:|::......:::..
 Worm   339 RFVFFASIFQIGLVAGLVVMAFTTNRVIAQIAFNFAIVSSGLNIMGVVKCVQLRCLQHVHYTLTV 403

  Fly   460 MG-AYYASIKLLPLDMS---PNYAGTLMGISGGMGALPALLMPYLEQLETDYKLVSSVRAA 516
            |. ..|||..|.|..:|   |||..                    ||.:|.:.::|.:..|
 Worm   404 MSFTAYASQFLSPTLVSIICPNYTN--------------------EQWKTFFLVISGLIVA 444

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18788NP_652665.3 MFS 129..>280 CDD:119392 32/151 (21%)
MFS_1 135..498 CDD:284993 76/411 (18%)
F56A4.10NP_001303739.1 MFS 52..453 CDD:391944 98/545 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2532
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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