DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18788 and vglu-3

DIOPT Version :9

Sequence 1:NP_652665.3 Gene:CG18788 / 59164 FlyBaseID:FBgn0042126 Length:540 Species:Drosophila melanogaster
Sequence 2:NP_499277.1 Gene:vglu-3 / 176442 WormBaseID:WBGene00011556 Length:544 Species:Caenorhabditis elegans


Alignment Length:541 Identity:110/541 - (20%)
Similarity:203/541 - (37%) Gaps:107/541 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 NRIILECGGHRVDNVPQVLNPKALPN-------------------WRIELAMALNH----TEYQL 88
            |..|..|.....|.|.|..:.|...:                   |:|.:   |.|    ..:.:
 Worm     3 NGSIRNCANAVADTVRQTFSRKTWEHKEQLQTITEQKKFFLRKVRWQIAI---LAHFGFAISFGI 64

  Fly    89 RSRLKAGKEQPDLNQISAKG-TRDREPAGEKRPGQEDSQERLSCSEQWPRQTQSLVVMAFYAGYV 152
            ||.....|.:...|...|.| ..:||                   ..|......::..:|:.||.
 Worm    65 RSNFGVAKNRMVNNFTDAYGEVHERE-------------------FLWTGAEVGMMESSFFYGYA 110

  Fly   153 LSHVPGGRLAERYGGKWVLSAAILTSAVLTLLTPTAVR---QGGLYALVAVRLLVGICEGPCFPA 214
            .|.:|.|.||.::....:....||.::.:.:|:..:..   ...::.:| |:.:.|:..|..:||
 Worm   111 ASQIPAGVLAAKFAPNKIFMLGILVASFMNILSAISFNFHPYTDIFVMV-VQAVQGLALGVLYPA 174

  Fly   215 VCALLAQWVPEQERGMLASCVLSGGEIGITMVQLVSGLLIAEQDWPVFFYLVGGGAVAWFLGFTL 279
            :..:...|.|..||..||:...:|..:|:......|..|::...|...||:.|...:.|.|.:..
 Worm   175 MHGVWKFWAPPLERSKLATTAFTGSSVGVMTGLPASAYLVSHFSWSTPFYVFGVVGIIWSLIWMY 239

  Fly   280 VCYSTPDHCPFIQSEEREYIRCNTSNSFLLTTGREREEMDGEDGYEGEDREHRREVEATCNTAPW 344
            |...:|:...:|..:|::.:                .|..|:...:          ..:..|.||
 Worm   240 VSSHSPETHGYISDDEKKQV----------------TEKIGDVAVK----------NMSLTTLPW 278

  Fly   345 RSMLNSTPLWALVSTSMQQE--FQQKLPQELQIALE--EVRARGTSFSELTTIIETIAPSVGNWI 405
            |.|:.|:.:||::..:..:.  |...|..:|....:  .:..:.:.|.       :|.|..|..|
 Worm   279 RDMMTSSAVWAIIICTFCRSWGFFLLLGNQLTYMKDVLHIDIKNSGFI-------SIFPQFGMCI 336

  Fly   406 ASLTTGRLSDVLIEQQILTRTQTRRLMSWLVFLCGSMYMLQIKMSGARIWSV-------LGMGAY 463
            .:|.||:|.|.|.....::....|:.::...|...:|.:..:......:.:|       .|.|:.
 Worm   337 VTLATGQLCDYLRSSGKMSTEAVRKSVNTFGFTVEAMMLGCLAFVRDPVIAVTCLVIACTGSGSV 401

  Fly   464 YASIKLLPLDMSPNYAGTLMGISGGMGALPAL------LMPYLEQLETDYKLVSSVRAAMWVIGA 522
            .:...:...|::|.||..||||:.|:||:..:      .:.|  |....:|.|..:..|:.:.|.
 Worm   402 LSGFNVNHFDIAPRYAPILMGIANGLGAVAGVGGMVTNTVTY--QNPDGWKWVFLLAMAIDIFGV 464

  Fly   523 SYI----SGDVQAF-NQPERE 538
            .:.    .|||..: .:||:|
 Worm   465 IFFLIFAKGDVLPWAREPEKE 485

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18788NP_652665.3 MFS 129..>280 CDD:119392 34/153 (22%)
MFS_1 135..498 CDD:284993 79/382 (21%)
vglu-3NP_499277.1 2A0114euk 47..485 CDD:129972 102/495 (21%)
MFS 52..471 CDD:119392 95/476 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2532
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D497052at2759
OrthoFinder 1 1.000 - - FOG0000034
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.820

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