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Protein Alignment CG18787 and nup42

DIOPT Version :9

Sequence 1:	NP_652664.2	Gene:	CG18787 / 59163	FlyBaseID:	FBgn0042125	Length:	398	Species:	Drosophila melanogaster
Sequence 2:	NP_998375.1	Gene:	nup42 / 406491	ZFINID:	ZDB-GENE-040426-2292	Length:	414	Species:	Danio rerio

Alignment Length:	476	Identity:	105/476 - (22%)
Similarity:	157/476 - (32%)	Gaps:	144/476 - (30%)

- Green bases have known domain annotations that are detailed below.

  Fly     1 MVVCRFFQQGSCRYGAKCNNEH------FDVKQYLKADMESSLNGKMW--PLSAYGPFKDKANFP 57
            |.||.||.||.||||..|.|||      .|.:...:.........::|  |....|.....|...
Zfish     1 MPVCNFFLQGRCRYGDTCWNEHPTGGRGGDYRGNQQPSNRGGFGNRVWINPSQRGGGGSSSAGGS 65

  Fly    58 N----------FIQDQ--SFEEVRFMCYEAKR-------------QNQFE--QFSQQFNREVLEA 95
            |          .:|..  ||.:.||...|.:|             |.:.|  |.|.|:......|
Zfish    66 NEWGRGAASARDVQSSEFSFSQNRFSALETQRAGAEDTHTTLDTIQKEMEVWQTSGQWPFSCYSA 130

  Fly    96 -NNKMKTMLQMSPQVLEMMIKIHETPEGGTVSA---APQQSSNPFAAAAPAAANTSASI------ 150
             |.::...:::.|:  |:.::.:.:...|.:..   :.||.:|.:.:......|.|:|.
Zfish   131 VNRQISGFIELCPE--ELRLEYYTSRASGDIQPYINSVQQLANQWRSRVQELRNMSSSTQISVIA 193

  Fly   151 -------------FGKPTLSAGNIFGNATSQASNTN-----SIFGG-----------TISNANAR 186
                         ||.|    |..||:|||...||:     :.|||           |.|.|.::
Zfish   194 ELKSSSPPASAPGFGSP----GPGFGSATSGFGNTSLSSPPAGFGGAGFGSGPQSSSTFSFAQSK 254

  Fly   187 NSIFGVG--AAATG-AQSVFGQPQQQQLQPAAQAFQGGNIFAQAQVQVQAQPVNPNPFGGFQQQQ 248
            .. ||..  ..|:| ..|.|.||......||..|..    |:.|....:::|    ..|||....
Zfish   255 TD-FGASNTQQASGFGSSAFAQPSSGFGNPAPSAAS----FSFAAADSESKP----SAGGFGSAS 310

  Fly   249 QQPQSTGIFGQAASQNMGGMFTQASQQLQQQQQAAASGLFAQAAASAFPNQQQMQQQQQMQQQQQ 313
            .....|...||.:  ..|..|..:|.........::|| |..|..||.|
Zfish   311 GFSFKTATAGQGS--GFGSGFGSSSGFGSSSGFGSSSG-FGSAFGSAAP---------------- 356

  Fly   314 MQQQQMHQQQQMQQQQMQQQQQFQMQQQQQMMQQQQQQQAQPTNEIQS--SVYSRMEDLNEQEIE 376
                                           .|...........:.||  .:::...:|..:|::
Zfish   357 -------------------------------AQSSSFGSTGGAADTQSGHGLFTANSELTPEELK 390

  Fly   377 AFKADQFLPGALPFKPPPRNL 397
            .|.|.:|..|.:|.:|||.:|
Zfish   391 EFMAKRFTLGQIPLRPPPADL 411

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.