DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG18748 and Vdup1

DIOPT Version :10

Sequence 1:NP_001097703.1 Gene:CG18748 / 59144 FlyBaseID:FBgn0042105 Length:409 Species:Drosophila melanogaster
Sequence 2:NP_612004.2 Gene:Vdup1 / 38023 FlyBaseID:FBgn0035103 Length:342 Species:Drosophila melanogaster


Alignment Length:310 Identity:70/310 - (22%)
Similarity:134/310 - (43%) Gaps:23/310 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 ILFHNNTQGVFYAGQMVAGQVTLSTDKAIQIKAIRLKLKGYAETHWTESKTDSNNKSTSESYNGF 71
            ::..:||..:::.||.::|:|.:..........:...:.|.....        |.:....:|:. 
  Fly     9 LIIFDNTSLLYFPGQFLSGRVLIELQDETPALGLHFHVVGEGVVR--------NGRRQERTYDK- 64

  Fly    72 EKYLSSKVYLLG--SEISPEMALEPGTRSYNFACPIPINCPSSFEGTHGRIRYMVDVNIIQPWKY 134
            |.|:..::.|||  .:..|.: |.||..|:.|...:|:..||:|.|.:|.|::.....:.:   .
  Fly    65 ENYIDFRMRLLGDVDQGGPAI-LSPGIHSFPFKLGLPLGLPSTFLGRYGWIQFYCKAALRE---N 125

  Fly   135 DSIFSR---AFTVIQVMDINTYNSVSQVPVQAKTEKTFGVWPFRSDPLTLELNLPQTGFVPGQTV 196
            :.|..:   .|.|:..:|:|....:...|...:.|...||.......:...::|.:.|:|||:.:
  Fly   126 NGIIHKNHQVFIVMNPIDLN
LEKPILAQPFTCEVEHKLGVVCVGGGQIKCRVSLDRGGYVPGENI 190

  Fly   197 PANVLIGNESKIRVHEVKVGLSMMITYYSDLSSGS--KCERKSVAKLKADGVLRNSRKMYDFQLM 259
            .....|.|.|.:.:...|..|:..|.|   |:.|.  :.|::.:|.|....:...::..:..:|.
  Fly   191 LVTAFISNYSNVSIKRTKASLTETIEY---LARGKVVQTEKRELAVLVRGKIRPGAKDEWHNELY 252

  Fly   260 IPSTPPSCFHLCRIIKIGYQIEVVAKVKGMHINGTLIMPVTICGVPISPS 309
            :|..||:..|.|.:|||.|.:..|.:.|.|.....|.:|:.:...|...|
  Fly   253 VPPLPPTNLHGCHLIKISYDVFFVIEPKSMEKEIKLQLPIVLATYPFRHS 302

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18748NP_001097703.1 Arrestin_N 5..151 CDD:425619 31/148 (21%)
Arrestin_C 175..306 CDD:460676 32/132 (24%)
Vdup1NP_612004.2 Arrestin_N 8..145 CDD:451447 31/148 (21%)
Arrestin_C 171..299 CDD:214976 32/130 (25%)

Return to query results.
Submit another query.