Protein Alignment RAD51C and rad51c

DIOPT Version :9

• Sequence 1: XP_006722064.1
• Gene: RAD51C / 5889
• HGNCID: 9820
• Length: 377
• Species: Homo sapiens
• Sequence 2: NP_001016923.1
• Gene: rad51c / 548416
• XenbaseID: XB-GENE-1015191
• Length: 361
• Species: Xenopus tropicalis
• Alignment Length: 368
• Identity: 227/368 - (61%)
• Similarity: 274/368 - (74%)
• Gaps: 18/368 - (4%)

Human    10 MQRDLVSFPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRRECLTNKPR 74
            ||||:.||||:||:||||::.||:|.|.:||....|||||.|||..||||.|||::
 Frog     1 MQRDVGSFPLAPALRVKLIATGFRTVETILEFSAVELSKEAGISNEEALEVLQIVK--------- 56

Human    75 YAGTSESHKKC------TALELLEQEHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQ 133
              |.::|...|      ||.:||.||.:|||:||||||||:|||||:|:.|.|||||.|||||||
 Frog    57 --GEAQSSSSCQIIQKHTAFDLLGQEQSQGFVITFCSALDEILGGGIPVAKITEICGVPGVGKTQ 119

Human   134 LCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALED 198
            |||||||||||||||||||||.||||||.||.::|::|:|.||:||..|||:.|:.::|.||::.
 Frog   120 LCMQLAVDVQIPECFGGVAGETVFIDTECSFRLERLMDIANACVQHCNLIAQGHQDKDHIKAMQT 184

Human   199 FTLDNILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDDLSLRTRLLN 263
            |||:.|||.||||.|.||.|||||:.|||||||.|.||:||::|.|||||||..:||||||||||
 Frog   185 FTLNEILSQIYYFSCHDYIELLAQINLLPDFLSSHPKVKLVVIDSIAFPFRHSFEDLSLRTRLLN 249

Human   264 GLAQQMISLANNHRLAVILTNQMTTKIDRNQALLVPALGESWGHAATIRLIFHWDRKQSRLATLY 328
            |..||:||||:|..|||:|||||||||..:.:.||||||||||||:|||||.||..|| |..||.
 Frog   250 GFGQQLISLAHNCNLAVVLTNQMTTKIGPSDSKLVPALGESWGHASTIRLILHWKSKQ-RFVTLC 313

Human   329 KSPSQKECTVLFQIKPQGFRDTVVTSACSLQTEGSLSTRKRSR 371
            ||||||:.||.:.|..|||||..:....:.....:.:.|||.|
 Frog   314 KSPSQKKATVPYGITSQGFRDAEIAEPEANALIPASNPRKRPR 356

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RAD51C	XP_006722064.1	HHH_5	12..57	CDD:291205	26/44 (59%)
		recomb_radA	21..349	CDD:131290	213/333 (64%)
		Rad51_DMC1_radA	100..348	CDD:238543	173/247 (70%)
rad51c	NP_001016923.1	Rad51_DMC1_radA	86..333	CDD:238543	173/247 (70%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	384	1.000	Domainoid score	I6420
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	1	1.000	-	-
Homologene	1	1.000	-	-		H14238
Inparanoid	1	1.050	450	1.000	Inparanoid score	I8408
NCBI	1	1.000	-	-
OMA	1	1.010	-	-		QHG55553
OrthoDB	1	1.010	-	-		D1345899at2759
OrthoFinder	1	1.000	-	-		FOG0006918
OrthoInspector	1	1.000	-	-		oto157683
Panther	1	1.100	-	-	LDO	PTHR46239
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	1	1.000	-	-		X4389
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	12	12.080