DRSC/TRiP Functional Genomics Resources

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Protein Alignment RAB5C and Rab39

DIOPT Version :10

Sequence 1:NP_001238968.1 Gene:RAB5C / 5878 HGNCID:9785 Length:249 Species:Homo sapiens
Sequence 2:NP_572405.2 Gene:Rab39 / 31684 FlyBaseID:FBgn0029959 Length:218 Species:Drosophila melanogaster


Alignment Length:214 Identity:77/214 - (35%)
Similarity:113/214 - (52%) Gaps:24/214 - (11%)


- Green bases have known domain annotations that are detailed below.


Human    54 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCL-DDTTVKFEIWDTAGQERYH 117
            ||:|:|:|:|.||||||:..|..|:|.|..:.|:|..|..:.:.: |.|.:|.::||||||||:.
  Fly     9 QFRLILIGDSTVGKSSLLKFFTDGKFAELSDPTVGVDFFARLIEMKDGTQIKLQLWDTAGQERFR 73

Human   118 SLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPN-IVIALAGNKADL---ASKRAVE 178
            |:...|||.:...::||||:|..:|.....|:.|.||...|: .|.||.|.|.||   ...|.|.
  Fly    74 SITKSYYRNSVGVLLVYDISNHASFEHIPLWMMEAQRHIEPHRPVFALVGCKLDLINAGGHREVT 138

Human   179 FQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK----KLPKNEPQNATGAPGRNRGVDLQENN 239
            .:|||.:|..:.|.|:||||::..||.|.|..:.:    ::...|.:...|..|...|.    :.
  Fly   139 TEEAQKFAKQHGLHFVETSARSGANVEEAFRMVTQEVYARIRSGEYKAEDGWDGIKSGF----SR 199

Human   240 PAS-----------RSQCC 247
            |.|           :|.||
  Fly   200 PNSLDFNLVVAEPEKSSCC 218

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RAB5CNP_001238968.1 Rab5_related 54..216 CDD:206653 68/170 (40%)
Rab39NP_572405.2 Rab39 8..218 CDD:133311 75/212 (35%)

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