DRSC/TRiP Functional Genomics Resources

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Protein Alignment RAB13 and Rab19

DIOPT Version :9

Sequence 1:NP_002861.1 Gene:RAB13 / 5872 HGNCID:9762 Length:203 Species:Homo sapiens
Sequence 2:NP_001261575.1 Gene:Rab19 / 38930 FlyBaseID:FBgn0015793 Length:219 Species:Drosophila melanogaster


Alignment Length:211 Identity:89/211 - (42%)
Similarity:138/211 - (65%) Gaps:23/211 - (10%)


- Green bases have known domain annotations that are detailed below.


Human     5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQER 69
            :|.|||::||||.|.||||::.||...|:...:.:|||:||.::|:.:|||:||||:||||||||
  Fly    18 FDFLFKIVLIGDCGTGKTCIVDRFKTGNYIERHGNTIGVDFSMKTIAVEGKQIKLQIWDTAGQER 82

Human    70 FKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKE 134
            |:|||.:|||.|.|:::|||||...||.|:|.|::.::...::.|..:|:|||||:|.:|:|..|
  Fly    83 FRTITQSYYRSANGVLIVYDITKRSSFSNLQKWIEEVRRYTASNVLIILVGNKCDLEEQREVDFE 147

Human   135 QADKLAR--EHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRSGNGNK----PPST------ 187
            :|.::.:  ...:...|||||.:|||::||..||.::      :|..:.|.    |.:|      
  Fly   148 EARQMCQYIPEILFVMETSAKENMNVEDAFRCLANEL------KRQHDANNVEEVPENTITLGQG 206

Human   188 -DLKTCDKKNTNKCSL 202
             .||:|    ::.|:|
  Fly   207 KPLKSC----SSSCNL 218

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RAB13NP_002861.1 Rab8_Rab10_Rab13_like 6..172 CDD:206659 80/167 (48%)
Effector region. /evidence=ECO:0000250 37..45 3/7 (43%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 173..203 9/41 (22%)
Rab19NP_001261575.1 Rab19 19..184 CDD:133267 80/164 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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