DRSC/TRiP Functional Genomics Resources

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Protein Alignment ABCD3 and Pmp70

DIOPT Version :9

Sequence 1:XP_006710865.2 Gene:ABCD3 / 5825 HGNCID:67 Length:683 Species:Homo sapiens
Sequence 2:NP_001259732.1 Gene:Pmp70 / 32992 FlyBaseID:FBgn0031069 Length:665 Species:Drosophila melanogaster


Alignment Length:690 Identity:388/690 - (56%)
Similarity:488/690 - (70%) Gaps:37/690 - (5%)


- Green bases have known domain annotations that are detailed below.


Human     3 AFSKYLTARNSSLAGAAFLLLCL-------LHKRRRALGLHGYFMETWREKSDEVMGELTDHVTH 60
            |.|| |....|::.|.|.:...|       :..::|..|.......|..||.|            
  Fly     4 ALSK-LANNQSAIVGVAGMTAALWIIAYGKMSNKKRKPGYEDKIQYTIAEKKD------------ 55

Human    61 CKKSGKPPLQNNEKEGKKERAVVDKVFFSRLIQILKIMVPRTFCKETGYLVLIAVMLVSRTYCDV 125
             ||:||              |.|:.|||.:|.|:|.|::|..:..|||.|.|:|..|:.|:..|:
  Fly    56 -KKAGK--------------AHVNSVFFKQLRQLLPILIPGFWSVETGLLFLVAAALIGRSVSDI 105

Human   126 WMIQNGTLIESGIIGRSRKDFKRYLLNFIAAMPLISLVNNFLKYGLNELKLCFRVRLTKYLYEEY 190
            |||||.|::||.||..:|..||..||.::.|:|.||:|.|.||:.|.||||.||..||.:||.:|
  Fly   106 WMIQNATVVESTIIHMNRTKFKTALLKYLTALPAISVVTNVLKWSLGELKLRFRTNLTHHLYSQY 170

Human   191 LQAFTYYKMGNLDNRIANPDQLLTQDVEKFCNSVVDLYSNLSKPFLDIVLYIFKLTSAIGAQGPA 255
            |..:|||||.||||||||.|||||.|::|||.|..|||||:|||.|||.:|:::||..:|.:.|:
  Fly   171 LNGYTYYKMSNLDNRIANADQLLTTDIDKFCESATDLYSNISKPVLDIFIYVYRLTVNLGGKTPS 235

Human   256 SMMAYLVVSGLFLTRLRRPIGKMTITEQKYEGEYRYVNSRLITNSEEIAFYNGNKREKQTVHSVF 320
            .:|.||:.:|:||||||||.|::|:.|||.|||:|||||||||||||:|||.||.|||.|:.:.:
  Fly   236 ILMLYLLFAGVFLTRLRRPTGRLTVEEQKLEGEFRYVNSRLITNSEEVAFYQGNVREKLTLLASY 300

Human   321 RKLVEHLHNFILFRFSMGFIDSIIAKYLATVVGYLVVSRPFLDLSHPRHLKSTHSELLEDYYQSG 385
            .||..||..|:.||.|||.||:||.||.|::||:..||.||...:||........:.|:.||..|
  Fly   301 SKLRSHLRKFLEFRVSMGIIDNIIGKYFASIVGFYAVSIPFFSENHPLLSGENSGQRLQAYYTYG 365

Human   386 RMLLRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNHGKYERTMVSQQE--KGIEGVQVI 448
            |||:::::|:||:|||||||:||||||||:|||::||.|||.|.||||||:...  :...|....
  Fly   366 RMLVKLAEAIGRLVLAGREMSRLAGFTARMTELIKVLSDLNKGTYERTMVNGNNLAQNAVGSASS 430

Human   449 PLIPGAGEIIIADNIIKFDHVPLATPNGDVLIRDLNFEVRSGANVLICGPNGCGKSSLFRVLGEL 513
            ...|..|.:...||||:|:.|||.|||||||:::|:|||:||.|||:|||||||||||||:||||
  Fly   431 NFGPNKGIMCFEDNIIRFEKVPLVTPNGDVLLQELSFEVKSGTNVLVCGPNGCGKSSLFRILGEL 495

Human   514 WPLFGGRLTKPERGKLFYVPQRPYMTLGTLRDQVIYPDGREDQKRKGISDLVLKEYLDNVQLGHI 578
            ||.:||::|||.|||||||||||||||||||||:|||..|:|.:|.|.||..|..|||.|||.::
  Fly   496 WPTWGGKVTKPSRGKLFYVPQRPYMTLGTLRDQIIYPHTRDDMRRLGHSDEDLMHYLDIVQLTYL 560

Human   579 LEREGGWDSVQDWMDVLSGGEKQRMAMARLFYHKPQFAILDECTSAVSVDVEGYIYSHCRKVGIT 643
            .:||.|.||::||:||||||||||:||||||||||||||||||||||||||||.:||:||:||||
  Fly   561 EQRENGLDSIEDWIDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGKMYSYCREVGIT 625

Human   644 LFTVSHRKSLWKHHEYYLHMDGRGNYEFKQITEDTVEFGS 683
            |||||||||||.||:|||..||||:|||..|.:|...|||
  Fly   626 LFTVSHRKSLWAHHDYYLQFDGRGSYEFATIDQDKDHFGS 665

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ABCD3XP_006710865.2 3a01203 1..671 CDD:273360 381/676 (56%)
Pmp70NP_001259732.1 3a01203 3..653 CDD:273360 381/676 (56%)
ABC_membrane_2 63..342 CDD:284003 157/278 (56%)
ABCD_peroxisomal_ALDP 446..651 CDD:213190 155/204 (76%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165158286
Domainoid 1 1.000 317 1.000 Domainoid score I1264
eggNOG 1 0.900 - - E1_COG4178
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2140
Inparanoid 1 1.050 762 1.000 Inparanoid score I547
Isobase 1 0.950 - 0 Normalized mean entropy S1054
OMA 1 1.010 - - QHG53776
OrthoDB 1 1.010 - - D146647at33208
OrthoFinder 1 1.000 - - FOG0000393
OrthoInspector 1 1.000 - - oto88820
orthoMCL 1 0.900 - - OOG6_100236
Panther 1 1.100 - - LDO PTHR11384
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3716
SonicParanoid 1 1.000 - - X313
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1716.750

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