DRSC/TRiP Functional Genomics Resources

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Protein Alignment runx3 and RunxA

DIOPT Version :9

Sequence 1:NP_001349273.1 Gene:runx3 / 58127 ZFINID:ZDB-GENE-000605-2 Length:438 Species:Danio rerio
Sequence 2:NP_001259747.1 Gene:RunxA / 4379817 FlyBaseID:FBgn0083981 Length:663 Species:Drosophila melanogaster


Alignment Length:431 Identity:164/431 - (38%)
Similarity:217/431 - (50%) Gaps:72/431 - (16%)


- Green bases have known domain annotations that are detailed below.


Zfish    22 STSRRFTPPSASFPCAKVTESQSMSAPGPLRSGRPVESRSVVDVLADHAGELVRTDSPNFLCSVL 86
            |.:.:.|||:   |...:.|:.:......|      ..|::.|.|.:|.|||:||.||.|:|:||
  Fly    57 SNTEQNTPPT---PAQLLNEAYTKMTSDIL------AERTLGDFLTEHPGELIRTSSPLFVCTVL 112

Zfish    87 PSHWRCNKTLPVAFKVVALGDVPDGTLVTVMAGNDENYSAELRNASAVMKNQVARFNDLRFVGRS 151
            |.|||.|||||||||||:|||:.|||:|||.|||||||.|||||.:||||||||:||||||||||
  Fly   113 PPHWRSNKTLPVAFKVVSLGDIMDGTMVTVRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRS 177

Zfish   152 GRGKSFTLTITVFTGPPQVATYHRAIKVTVDGPREPRRHRVKPDDPHKQFSDRLSDIERFQRASL 216
            ||||||||||||.|.||.:|||::|||||||||||||         .|.....|...::|..|. 
  Fly   178 GRGKSFTLTITVSTNPPHIATYNKAIKVTVDGPREPR---------SKTMLSLLGQQQQFHFAF- 232

Zfish   217 RMNPGNGTTRPHQTHYSPSSTTQIPGLWPDQIDPPTLKTCKVEDDLRW---TSTDLFQQRTSFPS 278
                   ..||.  |:   ||..:.|     ...|.:..|:...:..|   ::...:....:...
  Fly   233 -------GQRPF--HF---STDPLSG-----FRMPPIGNCQSASNTHWGYGSAASAYSPYLASSG 280

Zfish   279 LSPLTAPRFSDSHMHYPS-HFTYSANPSSTG--IGGLS----VAGMP--TSSRYHTYLPPPYPGN 334
            ||..|.|  :.:..:.|: .||.|:|..|..  .||.:    |..:|  |:|....:|.......
  Fly   281 LSSCTTP--TSAQFNNPALGFTCSSNDQSNNQDFGGATNRDCVPMLPDSTASDLDQHLSSLVGST 343

Zfish   335 QNQNSHFQTNSSPYHLYYGTGSGSYQFSMIPTGGSGSGGDRSPTRMLTSCTAAGGAAGNTGNNNL 399
            ..|.:|        |...|.| |....|....|.|| ||............:.|||.|..|.|::
  Fly   344 SGQMTH--------HSLLGAG-GQTSISSTVNGASG-GGSAGAGTAGGGAGSGGGAGGGAGGNSI 398

Zfish   400 I----NANLGNQSDGVDADGSHS--NSPTAMSASTRIDESV 434
            :    :.|..|:.:      .||  |.|.::|.|::.:..|
  Fly   399 LVPRYHTNASNEYN------VHSSQNGPRSLSDSSQAESPV 433

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
runx3NP_001349273.1 Runt 69..190 CDD:307137 97/120 (81%)
RunxI 334..438 CDD:312115 27/107 (25%)
RunxANP_001259747.1 Runt 95..216 CDD:279225 97/129 (75%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 211 1.000 Domainoid score I2735
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 221 1.000 Inparanoid score I3524
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000993
OrthoInspector 1 1.000 - - mtm6398
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11950
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X738
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
77.150

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