DRSC/TRiP Functional Genomics Resources

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Protein Alignment PTPRF and Ptp61F

DIOPT Version :10

Sequence 1:XP_005271136.1 Gene:PTPRF / 5792 HGNCID:9670 Length:1922 Species:Homo sapiens
Sequence 2:NP_476687.1 Gene:Ptp61F / 38160 FlyBaseID:FBgn0267487 Length:548 Species:Drosophila melanogaster


Alignment Length:325 Identity:118/325 - (36%)
Similarity:166/325 - (51%) Gaps:58/325 - (17%)


- Green bases have known domain annotations that are detailed below.


Human  1378 QQFTWENSNLEVNKPKNRYANVIAYDHSRVILTSIDGVPGS-DYINANYIDGYRKQNAYIATQGP 1441
            :||:...|....|:..|||.:|..|||||::|..     || ||||||.:...|.:..||.||||
  Fly    48 KQFSTSESERHTNRGLNRYRDVNPYDHSRIVLKR-----GSVDYINANLVQLERAERQYILTQGP 107

Human  1442 LPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPAR--GTETCGLIQVTL-LDTVELATY 1503
            |.:|:|.||.|||||::..|:|:.:|.||.::||..|||..  ..:...|..|.| ::.|.|.||
  Fly   108 LVDTVGHFWLMVWEQKSRAVLMLNKLMEKKQIKCHLYWPNEMGADKALKLPHVKLTVELVRLETY 172

Human  1504 ---TVRTFALHKSGSSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVK--ACNPLDAGPMVVHC 1563
               ..|.|.|....:.:.||:.||.:..|||.|:|..|...|.||::|:  .|...|.||.||||
  Fly   173 QNFVRRWFKLTDLETQQSREVMQFHYTTWPDFGIPSSPNAFLKFLQQVRDSGCLSRDVGPAVVHC 237

Human  1564 SAGVGRTGCFIVIDAMLERMKHEKTVDIYGH-----VTC-MRSQRNYMVQTEDQYVFIHEALLEA 1622
            |||:||:|.|.::|..|      ..:|.||.     |.| :||.|..::||.||..|.::|::|.
  Fly   238 SAGIGRSGTFCLVDCCL------VLIDKYGECNVSKVLCELRSYRMGLIQTADQLDFSYQAIIEG 296

Human  1623 ATCGHTEVPARNLYAHIQKLGQVPPGESVTAMELEFKLLAS-SKAHT---------SRFISANLP 1677
                            |:||      ...|.::.|..|::: ::.||         .|..|.|||
  Fly   297 ----------------IKKL------HDPTFLDAEEPLISNDTETHTLDELPPPLPPRVQSLNLP 339

Human  1678  1677
              Fly   340  339

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PTPRFXP_005271136.1 I-set 33..124 CDD:400151
Ig strand B 50..54 CDD:409353
Ig strand C 63..67 CDD:409353
Ig strand E 86..93 CDD:409353
Ig strand F 104..109 CDD:409353
Ig strand G 117..120 CDD:409353
IgI_2_RPTP_IIa_LAR_like 136..226 CDD:409400
Ig strand A 136..138 CDD:409400
Ig strand A' 143..147 CDD:409400
Ig strand B 150..159 CDD:409400
Ig strand C 164..170 CDD:409400
Ig strand C' 172..174 CDD:409400
Ig strand D 183..187 CDD:409400
Ig strand E 190..195 CDD:409400
Ig strand F 204..211 CDD:409400
Ig strand G 214..225 CDD:409400
IgI_3_RPTP_IIa_LAR_like 239..320 CDD:409401
Ig strand A 239..241 CDD:409401
Ig strand A' 245..249 CDD:409401
Ig strand B 252..260 CDD:409401
Ig strand C 265..271 CDD:409401
Ig strand C' 273..275 CDD:409401
Ig strand D 278..282 CDD:409401
Ig strand E 287..292 CDD:409401
Ig strand F 299..306 CDD:409401
Ig strand G 310..319 CDD:409401
FN3 <311..716 CDD:442628
FN3 714..820 CDD:238020
FN3 825..914 CDD:238020
FN3 923..1011 CDD:238020
FN3 1020..>1079 CDD:238020
R-PTPc-F-1 1350..1625 CDD:350474 105/261 (40%)
R-PTP-F-2 1627..1917 CDD:350477 13/61 (21%)
Ptp61FNP_476687.1 PTPc-N1_2 63..291 CDD:350393 99/238 (42%)
Blue background indicates that the domain is not in the aligned region.

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