DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LRRN1 and ltl

DIOPT Version :10

Sequence 1:NP_065924.3 Gene:LRRN1 / 57633 HGNCID:20980 Length:716 Species:Homo sapiens
Sequence 2:NP_729265.1 Gene:ltl / 38845 FlyBaseID:FBgn0268063 Length:817 Species:Drosophila melanogaster


Alignment Length:638 Identity:134/638 - (21%)
Similarity:229/638 - (35%) Gaps:225/638 - (35%)


- Green bases have known domain annotations that are detailed below.


Human    19 MTSLTE-----SSIQNSECPQL--CVCEI-RPWFTPQSTYREATTVDCNDLR-----LTRIPSNL 70
            ||||..     :|:|.|..|::  |.||. :.|        ....:.|..|.     :..:.:.|
  Fly     1 MTSLVYTVFHLASLQCSVRPEISPCTCETGKAW--------NHVELSCEKLESFNAVVDSLANKL 57

Human    71 SSDTQVLLLQSNNIAKTVDELQQL------FNLTELDFSQNNFTNIKEV---GLANLTQLT---- 122
            ::||.:.|..:::   .:|:|:..      |||.:|....|:..::.||   ||:|:|.|:    
  Fly    58 NADTNIDLKITHS---QLDDLEMRSFTDMNFNLYKLRMQWNSLKSLPEVPFRGLSNVTYLSIGDN 119

Human   123 ---------------------------------------------------------------TL 124
                                                                           .|
  Fly   120 DLDEIPKHALSHMPSLLTLDIGRCKIRAVQQEDFRGIQRVTNLILVSNIITRLDRGSFPKSLLIL 184

Human   125 HLEENQITEMTDYCLQDLSNLQELYINHNQISTIS-------------AH---------AFAGLK 167
            ||..||: |..:..|.||.||:.|:||.|.|:::.             ||         ..||:.
  Fly   185 HLGRNQL-ESLNGSLHDLHNLESLFINANNITSLDDELPDGGQLRLLMAHNNRLERLPANMAGMH 248

Human   168 NLLRLHLNSNKLKVIDSRWFDSTPNLEILMIGENPV-------------IGILDMNFKPLANLRS 219
            :|..:|::.|:|:..| |...:..||..:|...|.:             :..|.|....:.:|.|
  Fly   249 SLETVHIHCNQLRSFD-RVLRNAVNLSEVMADNNELEYLAQDEFASCSKVETLQMGCNHIKSLNS 312

Human   220 LVL-------AGMYLTDIPGNALV---GLDSLESLSFYDNKLVK-------VPQL---------- 257
            .:|       |.....||...::.   ||.||::|....|::.:       |.:|          
  Fly   313 SLLPILKLKNANFSFNDIEEFSMAELHGLRSLKTLQLSSNRIQRLLPDPRGVQELMLVNLDLDNN 377

Human   258 -------ALQKVPNLKFLDLNKNPIHKIQEGDFKNMLRLKELGI--NNMGELVSVDRYALDNLPE 313
                   ||..:.||:.|:|..|.:..:|.|||..|:||..|.:  |.:.||..::...|.:| :
  Fly   378 RIDSLNGALAGLGNLRILNLAGNRLEHLQVGDFDGMIRLDILDLTGNQLAELKPLEMTLLPSL-K 441

Human   314 LTKLEATNNPKLSYIHRLAFRSVPALESLMLNNNALNAIYQKTV-------ESLPNLREISIHSN 371
            :.|:...|..||..    .|:.:|.|....|.||.::.|..:.|       .::|...||.:..|
  Fly   442 ILKVAYNNITKLEQ----DFKGLPVLCQANLTNNQISTISSELVTNTRCKNHNVPGKLEIHLDDN 502

Human   372 PLRCDCVIHWINSNKTNIRFMEPLSMFCAMPPEYKGHQVKEVLIQDSSEQC--LPMISHDSFPNR 434
            |:.||            :...|...:........:|   :....::..|.|  |||:.:.:.|..
  Fly   503 PIMCD------------VGLNELCRLMAVQEARIRG---RSQCFENDQEVCTVLPMLYNVNLPIM 552

Human   435 LNVDIGTTVFLDCRAMAEPEPEIYWVTP----------------IGNKITVET 471
            :     |.:.|..|.:  |:|.:..:.|                :||.:.:.|
  Fly   553 V-----TNLKLTGREV--PKPMVRVIVPSLIKANNELLPPLIATLGNPVLIST 598

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LRRN1NP_065924.3 LRRNT 32..75 CDD:214470 9/50 (18%)
leucine-rich repeat 54..73 CDD:275380 3/23 (13%)
LRR 1 73..95 5/27 (19%)
leucine-rich repeat 74..96 CDD:275380 4/27 (15%)
LRR <89..355 CDD:443914 91/412 (22%)
LRR 2 96..117 8/23 (35%)
leucine-rich repeat 97..120 CDD:275380 8/25 (32%)
LRR 3 120..141 8/87 (9%)
leucine-rich repeat 121..144 CDD:275380 10/89 (11%)
LRR 4 144..165 9/42 (21%)
leucine-rich repeat 145..168 CDD:275380 10/44 (23%)
LRR 5 168..189 6/20 (30%)
leucine-rich repeat 169..192 CDD:275380 6/22 (27%)
LRR 6 192..213 6/33 (18%)
leucine-rich repeat 193..216 CDD:275380 5/35 (14%)
LRR 7 216..237 6/30 (20%)
leucine-rich repeat 217..240 CDD:275380 8/32 (25%)
LRR 8 240..261 8/44 (18%)
leucine-rich repeat 241..264 CDD:275380 7/46 (15%)
LRR 9 264..285 9/20 (45%)
leucine-rich repeat 265..288 CDD:275380 9/22 (41%)
leucine-rich repeat 289..313 CDD:275380 7/25 (28%)
LRR 10 313..335 5/21 (24%)
leucine-rich repeat 314..335 CDD:275380 5/20 (25%)
LRR 11 338..359 6/27 (22%)
leucine-rich repeat 339..362 CDD:275378 6/29 (21%)
leucine-rich repeat 363..375 CDD:275378 4/11 (36%)
LRRCT 371..419 CDD:214507 6/47 (13%)
I-set 429..516 CDD:400151 10/59 (17%)
Ig strand B 443..447 CDD:409562 1/3 (33%)
Ig strand C 456..460 CDD:409562 0/3 (0%)
Ig strand E 483..486 CDD:409562
Ig strand F 496..501 CDD:409562
Ig strand G 509..512 CDD:409562
FN3 531..600 CDD:214495
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 691..716
ltlNP_729265.1 LRR 65..476 CDD:443914 91/420 (22%)
leucine-rich repeat 65..86 CDD:275380 3/23 (13%)
leucine-rich repeat 87..110 CDD:275380 7/22 (32%)
leucine-rich repeat 111..134 CDD:275380 2/22 (9%)
leucine-rich repeat 135..158 CDD:275380 0/22 (0%)
leucine-rich repeat 159..180 CDD:275380 0/20 (0%)
leucine-rich repeat 181..203 CDD:275380 9/22 (41%)
leucine-rich repeat 204..226 CDD:275380 6/21 (29%)
leucine-rich repeat 227..249 CDD:275380 4/21 (19%)
leucine-rich repeat 250..272 CDD:275380 6/22 (27%)
leucine-rich repeat 273..296 CDD:275380 3/22 (14%)
leucine-rich repeat 297..315 CDD:275380 4/17 (24%)
leucine-rich repeat 320..335 CDD:275378 3/14 (21%)
leucine-rich repeat 344..366 CDD:275380 4/21 (19%)
leucine-rich repeat 367..391 CDD:275380 3/23 (13%)
leucine-rich repeat 392..415 CDD:275380 9/22 (41%)
leucine-rich repeat 416..439 CDD:275380 6/22 (27%)
leucine-rich repeat 440..462 CDD:275380 6/26 (23%)
leucine-rich repeat 463..483 CDD:275380 6/19 (32%)
Blue background indicates that the domain is not in the aligned region.

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