DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34367 and Hoxa5

DIOPT Version :10

Sequence 1:NP_001097140.1 Gene:CG34367 / 5740879 FlyBaseID:FBgn0085396 Length:420 Species:Drosophila melanogaster
Sequence 2:NP_077365.1 Gene:Hoxa5 / 79241 RGDID:620609 Length:381 Species:Rattus norvegicus


Alignment Length:284 Identity:68/284 - (23%)
Similarity:108/284 - (38%) Gaps:66/284 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 NSMTGARLKKPTEVK---NSIFINSI-------------------SSGGSYADTCA--SGEESVD 66
            ::.|.|..|..|.:|   :|.|:||.                   |....:.|:.:  ||.....
  Rat    95 DAQTTASHKSSTHIKKQMSSYFVNSFCGRYPNGPDYQLHNYGDHSSVSEQFRDSASMHSGRYGYG 159

  Fly    67 IDITDLSVSESNT------------ILAIDPEPTEESHSQREEHVETYSLSP-TLHKAAVEPKP- 117
            .:..||||..|.:            .......|.|..:||  ....|:|..| .|..:||.|.| 
  Rat   160 YNGMDLSVGRSGSGHFGSGERARSYAAGASAAPAEPRYSQ--PATSTHSPPPDPLPCSAVAPSPG 222

  Fly   118 -------KNWLISE--------DLDVDSQPEDPKMSGLPTASITECTEDSNTPKLAPDKPLLPEE 167
                   ||.|.:.        ...:.|:      .|:.|||..|....:::.:........|..
  Rat   223 SDSHHGGKNSLGNSSGASANAGSTHISSR------EGVGTASAAEEDAPASSEQAGAQSEPSPAP 281

  Fly   168 CVSPE--PSRNREHCDPLDTSLVNTKQRRSRTNFTLDQLNELERLFEETHYPDAFMREELSQRLG 230
            ...|:  |...:.|..  ..::...:.:|:||.:|..|..|||:.|....|.....|.|::..|.
  Rat   282 PAQPQIYPWMRKLHIS--HDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALC 344

  Fly   231 LSEARVQVWFQNRRAKCRKHENQM 254
            |||.::::||||||.|.:| :|::
  Rat   345 LSERQIKIWFQNRRMKWKK-DNKL 367

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34367NP_001097140.1 Homeodomain 193..249 CDD:459649 23/55 (42%)
OAR 392..410 CDD:461067
Hoxa5NP_077365.1 Homeodomain 307..363 CDD:459649 23/55 (42%)
Blue background indicates that the domain is not in the aligned region.

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