DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34367 and Rhox13

DIOPT Version :10

Sequence 1:NP_001097140.1 Gene:CG34367 / 5740879 FlyBaseID:FBgn0085396 Length:420 Species:Drosophila melanogaster
Sequence 2:NP_001395833.1 Gene:Rhox13 / 691244 RGDID:1586264 Length:234 Species:Rattus norvegicus


Alignment Length:286 Identity:78/286 - (27%)
Similarity:115/286 - (40%) Gaps:67/286 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LAQFVTKSFEFNLTNNSVHALFNSMTGARLKKPTEVKNSIFINSISSGGSYADTCASGEESVDID 68
            :||.|  ||:.|..........|:...||....|....:....:::..|:...:.|| ..::..|
  Rat     1 MAQRV--SFDHNYYFMECEEETNAGVQARAVASTSTMEASGAMAVAQAGAACRSHAS-RGTIGYD 62

  Fly    69 ITDLSVSESNTILAIDPEPTEESHSQREEHVETYSLSPTLHKAAVEPKPKNWLISEDLDVDSQPE 133
                :|.|.|    :..:|.:||.|..||..:                      .||.|.|...|
  Rat    63 ----TVYEPN----VKGDPKQESESDTEESYD----------------------DEDDDEDEGDE 97

  Fly   134 DPKMSGLPTASITECTEDSNTPK--------LAPDKPLLPE----ECVSPEPSRNREHCDPLDTS 186
            |         .::...:|::.|:        .|...|:.|.    :...|..||.|.|       
  Rat    98 D---------DLSTSDQDTSDPEQEEAALFVAAAAPPIAPAAAAIQIPGPHRSRRRRH------- 146

  Fly   187 LVNTKQRRSRTN-FTLDQLNELERLFEETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKH 250
               .:.|||... ||..|:.|:|.|||||.|||...|.||::.|.:.|.:|:|||.|||||.||:
  Rat   147 ---RRHRRSSPYLFTQWQVEEMENLFEETPYPDVLTRGELARTLNVPEVKVKVWFSNRRAKQRKN 208

  Fly   251 ENQ-MHKGFLVGSRSPPIATPL-EPC 274
            |.: |.:....|:......|.: |||
  Rat   209 ERRAMLRNMPSGAEDFIFMTDVEEPC 234

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34367NP_001097140.1 Homeodomain 193..249 CDD:459649 30/56 (54%)
OAR 392..410 CDD:461067
Rhox13NP_001395833.1 Homeodomain 157..207 CDD:459649 27/49 (55%)
Blue background indicates that the domain is not in the aligned region.

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