DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34367 and Vsx1

DIOPT Version :10

Sequence 1:NP_001097140.1 Gene:CG34367 / 5740879 FlyBaseID:FBgn0085396 Length:420 Species:Drosophila melanogaster
Sequence 2:NP_001103016.1 Gene:Vsx1 / 689704 RGDID:1305667 Length:369 Species:Rattus norvegicus


Alignment Length:132 Identity:51/132 - (38%)
Similarity:67/132 - (50%) Gaps:20/132 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   142 TASITECTEDSNTPKLAP--DKPLLPEECVSPEP-----------------SRNREHCDP-LDTS 186
            ||:...|...::...|.|  .:|.:.:..|.|.|                 |.:.|..|| :..:
  Rat    98 TAARARCLLLADLRLLPPAGPEPAVAQSPVHPPPALGSQQRSENISTSDGDSPSEEKNDPKMSLT 162

  Fly   187 LVNTKQRRSRTNFTLDQLNELERLFEETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKHE 251
            |...|:||.||.||..||.|||:.|.|.||||.:.||.|:.:..|.|.|:||||||||||.||.|
  Rat   163 LGKRKKRRHRTVFTAHQLEELEKAFGEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKRE 227

  Fly   252 NQ 253
            .:
  Rat   228 KR 229

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34367NP_001097140.1 Homeodomain 193..249 CDD:459649 33/55 (60%)
OAR 392..410 CDD:461067
Vsx1NP_001103016.1 Homeodomain 169..225 CDD:459649 33/55 (60%)
Blue background indicates that the domain is not in the aligned region.

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