DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34367 and Hoxa6

DIOPT Version :10

Sequence 1:NP_001097140.1 Gene:CG34367 / 5740879 FlyBaseID:FBgn0085396 Length:420 Species:Drosophila melanogaster
Sequence 2:NP_001178016.1 Gene:Hoxa6 / 685732 RGDID:1590236 Length:233 Species:Rattus norvegicus


Alignment Length:144 Identity:37/144 - (25%)
Similarity:62/144 - (43%) Gaps:32/144 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   134 DPKMSGLPTASITECTEDSNTPKLAPDKPL--LPEECVSPEPS-----------RNREHCDPL-- 183
            |..:||        .:...|:.:..|...|  .||:...|:.|           .:|::..|:  
  Rat    82 DKDLSG--------ASPSGNSKQRGPGDYLHFSPEQQYKPDSSSVQGKALHEEGTDRKYTSPVYP 138

  Fly   184 --------DTSLVNTKQRRSRTNFTLDQLNELERLFEETHYPDAFMREELSQRLGLSEARVQVWF 240
                    ..::..:..||.|..:|..|..|||:.|....|.....|.|::..|.|:|.::::||
  Rat   139 WMQRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWF 203

  Fly   241 QNRRAKCRKHENQM 254
            ||||.|.:| ||::
  Rat   204 QNRRMKWKK-ENKL 216

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34367NP_001097140.1 Homeodomain 193..249 CDD:459649 22/55 (40%)
OAR 392..410 CDD:461067
Hoxa6NP_001178016.1 Homeodomain 156..212 CDD:459649 22/55 (40%)
Blue background indicates that the domain is not in the aligned region.

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