DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34367 and Isx

DIOPT Version :10

Sequence 1:NP_001097140.1 Gene:CG34367 / 5740879 FlyBaseID:FBgn0085396 Length:420 Species:Drosophila melanogaster
Sequence 2:NP_001387929.1 Gene:Isx / 682968 RGDID:1592776 Length:242 Species:Rattus norvegicus


Alignment Length:223 Identity:71/223 - (31%)
Similarity:94/223 - (42%) Gaps:72/223 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   122 ISEDLDVDS-QPEDPKMSGLP---TASITECTEDSNTP------------------KLAPDKPLL 164
            |..|::..| ..|.|:..||.   .|.:...||..|.|                  ||  :||  
  Rat     6 IQRDIEKSSGYCEAPEKLGLSFSIEAILKRPTERRNLPRPQSIGGGDSRQTTTSGSKL--EKP-- 66

  Fly   165 PEECVSPEPSRNREHCDPLDTSLVNTKQRRSRTNFTLDQLNELERLFEETHYPDAFMREELSQRL 229
                ...:|...|::            :||.||.||.:||.|||:||..|||||..:|.:|:.|:
  Rat    67 ----TQDQPQEERKN------------KRRVRTTFTTEQLQELEKLFHFTHYPDIHVRSQLASRI 115

  Fly   230 GLSEARVQVWFQNRRAKCRKHE--------------NQMHKGFLVGSRS---PPIA--------- 268
            .|.|||||:||||:|||.||.|              ...|....:|:..   ||::         
  Rat   116 NLPEARVQIWFQNQRAKWRKQEKSGSLSAPQQPGSCTDAHCSAHIGATHRMLPPLSDSARFKLVP 180

  Fly   269 TPLEPCRVAPYVSLAALRSSSVPSHPAA 296
            .|..||.:||....|    .:.||||||
  Rat   181 CPDSPCPMAPMGPAA----PAWPSHPAA 204

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34367NP_001097140.1 Homeodomain 193..249 CDD:459649 34/55 (62%)
OAR 392..410 CDD:461067
IsxNP_001387929.1 Homeodomain 79..135 CDD:459649 34/55 (62%)
Blue background indicates that the domain is not in the aligned region.

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