DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34367 and hoxc6b

DIOPT Version :10

Sequence 1:NP_001097140.1 Gene:CG34367 / 5740879 FlyBaseID:FBgn0085396 Length:420 Species:Drosophila melanogaster
Sequence 2:XP_073772180.1 Gene:hoxc6b / 58045 ZFINID:ZDB-GENE-000822-1 Length:228 Species:Danio rerio


Alignment Length:236 Identity:57/236 - (24%)
Similarity:89/236 - (37%) Gaps:68/236 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 INSISSGGSYADTCASGEESVDIDITDLSVSESNTILAIDPEPTEESHSQREEHVETYSLSPTLH 109
            :||..:..|.:....||:|.    :..:::|.:|    .||          ..|...|..:...:
Zfish     1 MNSYFTNPSLSCHLNSGQEV----LPSVAISSTN----YDP----------VRHFSPYGAAVAQN 47

  Fly   110 KAAVEP-------------KPKNW---LISEDLDVDSQPEDPKMSGLPTASITEC------TEDS 152
            :....|             :|..:   :..:|.||           ||:     |      |:.|
Zfish    48 RIYSNPFYSHQENVMFGSSRPYEYGSNMFYQDKDV-----------LPS-----CRQGFGQTQGS 96

  Fly   153 NTPKLAPD--KPLLPEECVS--PEPSRNREHCDPLDTSLV--NTKQRRSRTNFTLDQLNELERLF 211
            .|...|.|  |.:.|:..|.  |...|...|      |.|  .:.:||.|..::..|..|||:.|
Zfish    97 LTQDYASDQGKTMEPKGSVQIYPWMQRMNSH------SGVGYGSDRRRGRQIYSRYQTLELEKEF 155

  Fly   212 EETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKHEN 252
            ....|.....|.|::..|.|||.::::||||||.|.:|..|
Zfish   156 HYNRYLTRRRRIEIANTLCLSERQIKIWFQNRRMKWKKESN 196

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34367NP_001097140.1 Homeodomain 193..249 CDD:459649 22/55 (40%)
OAR 392..410 CDD:461067
hoxc6bXP_073772180.1 None
Blue background indicates that the domain is not in the aligned region.

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