DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG34367 and gsc

DIOPT Version :10

Sequence 1:NP_001097140.1 Gene:CG34367 / 5740879 FlyBaseID:FBgn0085396 Length:420 Species:Drosophila melanogaster
Sequence 2:NP_001016704.1 Gene:gsc / 549458 XenbaseID:XB-GENE-486771 Length:243 Species:Xenopus tropicalis


Alignment Length:76 Identity:36/76 - (47%)
Similarity:50/76 - (65%) Gaps:9/76 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   176 NREHCDPLDTSLVNTKQRRSRTNFTLDQLNELERLFEETHYPDAFMREELSQRLGLSEARVQVWF 240
            |:.||         .::||.||.||.:||..||.||:||.|||...||:|::|:.|.|.:|:|||
 Frog   141 NQLHC---------RRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARRVHLREEKVEVWF 196

  Fly   241 QNRRAKCRKHE 251
            :|||||.|:.:
 Frog   197 KNRRAKWRRQK 207

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34367NP_001097140.1 Homeodomain 193..249 CDD:459649 32/55 (58%)
OAR 392..410 CDD:461067
gscNP_001016704.1 Homeodomain 149..205 CDD:459649 32/55 (58%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.