DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34367 and Hoxb6

DIOPT Version :10

Sequence 1:NP_001097140.1 Gene:CG34367 / 5740879 FlyBaseID:FBgn0085396 Length:420 Species:Drosophila melanogaster
Sequence 2:NP_001385781.1 Gene:Hoxb6 / 497986 RGDID:1562142 Length:224 Species:Rattus norvegicus


Alignment Length:241 Identity:54/241 - (22%)
Similarity:86/241 - (35%) Gaps:71/241 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 NSIFINSISSGGSYADTCASGEESVDIDITDLSVSESNTI--LAIDPEPTEESHSQREEHVET-- 101
            :|.|:||     ::..|.|||:||.   :..|.:..|...  |...|.|......|.:....:  
  Rat     2 SSYFVNS-----TFPVTLASGQESF---LGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFAASSY 58

  Fly   102 ---------------YSLSPTLHK---------AAVEPKPKNWLISEDLDVDSQPEDPKMSGLPT 142
                           |..:|..::         .|.||.|            ..||..|      
  Rat    59 YPPAGGGYGRAAPCDYGPAPAFYREKDAACALSGADEPPP------------FHPEPRK------ 105

  Fly   143 ASITECTEDSN----TPKLAPDKPLLPEECVSPEPSRNREHCDPLDTSLVNTKQRRSRTNFTLDQ 203
               ::|.:|.:    |.:.....|:.|.          .:..:..::|......||.|..:|..|
  Rat   106 ---SDCAQDKSVFGETEEQKCSTPVYPW----------MQRMNSCNSSSFGPSGRRGRQTYTRYQ 157

  Fly   204 LNELERLFEETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRK 249
            ..|||:.|....|.....|.|::..|.|:|.::::||||||.|.:|
  Rat   158 TLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 203

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34367NP_001097140.1 Homeodomain 193..249 CDD:459649 22/55 (40%)
OAR 392..410 CDD:461067
Hoxb6NP_001385781.1 Homeodomain 147..203 CDD:459649 22/55 (40%)
Blue background indicates that the domain is not in the aligned region.

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