DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34367 and repo

DIOPT Version :10

Sequence 1:NP_001097140.1 Gene:CG34367 / 5740879 FlyBaseID:FBgn0085396 Length:420 Species:Drosophila melanogaster
Sequence 2:NP_477026.1 Gene:repo / 47285 FlyBaseID:FBgn0011701 Length:612 Species:Drosophila melanogaster


Alignment Length:469 Identity:104/469 - (22%)
Similarity:159/469 - (33%) Gaps:163/469 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 SVHALFNSMTGARLKKPTEVKNSIFINSISSGGSYADTCASGEESVDIDITD----LSVSESNTI 80
            |||.|.:.....:.::.....|:|..|....|........|......:|..:    .|.|:....
  Fly    41 SVHELCSQQQQQQQQQRLPDCNTILPNGGGGGAGSGGAGGSPNYVTKLDFVNKMGCYSPSQKYEY 105

  Fly    81 LA-----IDPEPTEESHSQREEHVETYSLSP-------TLHKAAVEPKPKNWL----------IS 123
            ::     ::.:..::.|.|..:|   |:.:|       .|||.:.:.:.:...          ::
  Fly   106 ISAPQKLVEQQQQQQHHHQHHQH---YTATPPPSHNGILLHKQSSQQQQQQQQQLVGILDYHPLN 167

  Fly   124 EDLDVDSQPED------------------------------------------------------ 134
            ..||..|.|:|                                                      
  Fly   168 GKLDYSSSPKDQYEPQQLQHLYGGSPHHLDHLDHGSDGLLQDSSPVMINGGSAGGKLKKPDEMCS 232

  Fly   135 -----------PKMSGLPTASITECTEDSNTPK----------------LAPDKPLLPEECVSPE 172
                       |..|.......|..|.::|:..                .||        ....:
  Fly   233 QLEAGGAGVTPPSSSSTVVNGTTNGTGNANSSSSAGVGIQGAAGTAGGVAAP--------AAKKD 289

  Fly   173 PSRNREHCDPLDTSLVNTKQRRSRTNFTLDQLNELERLFEETHYPDAFMREELSQRLGLSEARVQ 237
            .|.:::..||     ...|::::||.||..||.||||.||...|||.|.||||:.:|.|||:|||
  Fly   290 GSSSKKKGDP-----NGIKKKKTRTTFTAYQLEELERAFERAPYPDVFAREELAIKLNLSESRVQ 349

  Fly   238 VWFQNRRAKCRKHENQMHKGFLVGSRSPPIATPLEPCRVAPYVSLAALRSSSVPSHPAAATSSNP 302
            |||||||||.||||.....|::..| :||.|| |.|..:||                  ..:|.|
  Fly   350 VWFQNRRAKWRKHEPPRKTGYIKTS-TPPTAT-LNPGTLAP------------------PFTSYP 394

  Fly   303 QAPGVSGTSSSGKVVTVDSPHNHNPAISRSAIKQFSSTVAAAAAFSAFDPAIISVAAHQYAAAIT 367
            |...|:...|.....:..:|:...|        |||....||:.:..:        :.||.|.:.
  Fly   395 QTTTVTPPGSMDSWTSYQTPYELTP--------QFSLLSPAASPYGTY--------SGQYGAYVH 443

  Fly   368 NGTVPAGLFSVPQY 381
            .    :.||.:..|
  Fly   444 E----SQLFPMRHY 453

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34367NP_001097140.1 Homeodomain 193..249 CDD:459649 36/55 (65%)
OAR 392..410 CDD:461067
repoNP_477026.1 Homeodomain 313..361 CDD:459649 32/47 (68%)
Blue background indicates that the domain is not in the aligned region.

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