DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34367 and pax3

DIOPT Version :10

Sequence 1:NP_001097140.1 Gene:CG34367 / 5740879 FlyBaseID:FBgn0085396 Length:420 Species:Drosophila melanogaster
Sequence 2:XP_012825755.1 Gene:pax3 / 448464 XenbaseID:XB-GENE-482740 Length:486 Species:Xenopus tropicalis


Alignment Length:389 Identity:98/389 - (25%)
Similarity:145/389 - (37%) Gaps:146/389 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 SVSESNTILAI-----DPEPTEESHSQREEHVE--TYSLSPTL-HKAAVEPKPKNWLISEDLDVD 129
            |||..:.||..     |.|..|....::||..:  .:|:...| .:|...|:.:     |..|:|
 Frog   151 SVSSISRILRSKFGKGDEEDIELDRKEQEESEKRAKHSIDGILRERAPASPESE-----EGSDID 210

  Fly   130 SQPEDPKMSGLPTASITECTEDSNTPKLAPDKPLLPEECVSPEPSRNREHCDPLDTSLVNTKQRR 194
            |:|:.|                                                    :..||||
 Frog   211 SEPDLP----------------------------------------------------LKRKQRR 223

  Fly   195 SRTNFTLDQLNELERLFEETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKH--ENQ-MHK 256
            |||.||.:||.||||.||.|||||.:.||||:||..|:||||||||.||||:.||.  .|| |..
 Frog   224 SRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAF 288

  Fly   257 GFLVGSRSPPIATP-----------LEPCRVAPYVS-------------LAALRSSSVPSHPAAA 297
            ..|:....||.|.|           .:|..:...||             .:::..||:||:|.::
 Frog   289 NHLIPGAFPPAAMPALPTYQLSETSYQPTSIPQAVSDPSNTVHRPQPLPPSSVHQSSLPSNPESS 353

  Fly   298 TS-----------------------SNPQAPGVSGTSSSGKVVTVDSPHN---HNP--------- 327
            ::                       |||..|.: |...|.:|:.:.:.|.   |.|         
 Frog   354 SAYCLPSGRHGFSSYTDSFVPPSGPSNPMNPAI-GNGLSPQVMGLLTNHGGVPHQPQTDYALSPL 417

  Fly   328 --------AISRSAIKQFS--STVAAAAAFSAFDPAIISVAAHQYAAAITNGTVPAGLFSVPQY 381
                    |:|.|..::..  .::.:.:...::.|...|.:.:...        |...:..|||
 Frog   418 TGGLEPPTAVSASCSQRLEHMKSLDSLSTSQSYCPPTYSTSGYSME--------PVTGYQYPQY 473

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34367NP_001097140.1 Homeodomain 193..249 CDD:459649 39/55 (71%)
OAR 392..410 CDD:461067
pax3XP_012825755.1 PAX 35..162 CDD:238076 5/10 (50%)
Homeodomain 222..278 CDD:459649 39/55 (71%)
Pax7 349..393 CDD:403540 7/44 (16%)
Blue background indicates that the domain is not in the aligned region.

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