DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34367 and Hoxa4

DIOPT Version :10

Sequence 1:NP_001097140.1 Gene:CG34367 / 5740879 FlyBaseID:FBgn0085396 Length:420 Species:Drosophila melanogaster
Sequence 2:NP_032291.1 Gene:Hoxa4 / 15401 MGIID:96176 Length:285 Species:Mus musculus


Alignment Length:218 Identity:58/218 - (26%)
Similarity:83/218 - (38%) Gaps:66/218 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   130 SQPED-------PKMSGLPTASITECTEDSNTPKL-----APDKPLLPEECVSPEPSRNRE---- 178
            ::||.       |..:..|.|....|.....||.:     ||..|||..: ..|...:.:|    
Mouse    97 ARPEQSPAPGAHPSPAPQPPAPPRHCAPGPTTPAVATGGSAPACPLLLAD-QGPAGPKGKEPVVY 160

  Fly   179 ------HCDPLDTSLVNTKQRRSRTNFTLDQLNELERLFEETHYPDAFMREELSQRLGLSEARVQ 237
                  |...:::|....:.:||||.:|..|:.|||:.|....|.....|.|::..|.|||.:|:
Mouse   161 PWMKKIHVSAVNSSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVK 225

  Fly   238 VWFQNRRAKCRKHENQMHKGFLVGSRSPPIATPLEPCRVAPYVSLAALRSSSVPSHPAAATSSNP 302
            :||||||.|.:|.    ||                       :....:|||:..|.||.      
Mouse   226 IWFQNRRMKWKKD----HK-----------------------LPNTKMRSSNTASAPAG------ 257

  Fly   303 QAPGVSGTSSSGKVVTVDSPHNH 325
             .||.:.|         .|||.|
Mouse   258 -PPGKAQT---------HSPHPH 270

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34367NP_001097140.1 Homeodomain 193..249 CDD:459649 25/55 (45%)
OAR 392..410 CDD:461067
Hoxa4NP_032291.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 19..70
PHA03247 <43..161 CDD:223021 15/64 (23%)
Antp-type hexapeptide 159..164 0/4 (0%)
Homeodomain 181..237 CDD:459649 25/55 (45%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 238..285 15/76 (20%)
Blue background indicates that the domain is not in the aligned region.

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