DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34367 and pax6l

DIOPT Version :10

Sequence 1:NP_001097140.1 Gene:CG34367 / 5740879 FlyBaseID:FBgn0085396 Length:420 Species:Drosophila melanogaster
Sequence 2:XP_002938577.1 Gene:pax6l / 100485335 XenbaseID:XB-GENE-29077751 Length:281 Species:Xenopus tropicalis


Alignment Length:234 Identity:68/234 - (29%)
Similarity:100/234 - (42%) Gaps:82/234 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   166 EECVSPEPSRNREH-----CDPLDTSLV----NTKQRRSRTNFTLDQLNELERLFEETHYPDAFM 221
            :.|...:.|.:.||     .|.||.|.:    ..|.:|:||:||.:|:..||:.||.|||||.|.
 Frog    41 DSCQQLDSSLDSEHQPGAANDDLDESQIRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFA 105

  Fly   222 REELSQRLGLSEARVQVWFQNRRAKCRKHE---NQ----------------------------MH 255
            ||.|:.::.|.|||:||||.|||||.|:.|   ||                            .:
 Frog   106 RERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQASNTSSHLSINSSFSSSVYQSIPQPSN 170

  Fly   256 KGFLVGSRS-----------PPIAT-------PLEP---------CRV--APYVSLAALRSSSVP 291
            .|.::| ||           ||:.:       |::|         |.:  :|.||   :||....
 Frog   171 SGSMLG-RSEAAITNSYGSLPPLPSFTMPNNLPIQPIASQTSTYSCMISSSPSVS---VRSYDAY 231

  Fly   292 SHPAAATSSNPQAPGVSGTSSSGKVVTVDSPHNHNPAIS 330
            :.|...|..:.|..|...:||:|.:         :|.:|
 Frog   232 TPPQLQTHMSNQNLGSGASSSTGLI---------SPGVS 261

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34367NP_001097140.1 Homeodomain 193..249 CDD:459649 32/55 (58%)
OAR 392..410 CDD:461067
pax6lXP_002938577.1 Homeodomain 78..133 CDD:459649 32/54 (59%)
Blue background indicates that the domain is not in the aligned region.

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