DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34367 and vsx1

DIOPT Version :10

Sequence 1:NP_001097140.1 Gene:CG34367 / 5740879 FlyBaseID:FBgn0085396 Length:420 Species:Drosophila melanogaster
Sequence 2:NP_001093670.1 Gene:vsx1 / 100101658 XenbaseID:XB-GENE-853166 Length:344 Species:Xenopus tropicalis


Alignment Length:190 Identity:61/190 - (32%)
Similarity:87/190 - (45%) Gaps:49/190 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   105 SPTLHKAAVEPKPKNWLISEDLDVDSQPEDPKMSGLPT-----ASI------------------- 145
            |...|..|:  :.|.:.|::.|.::::.:.|.:| ||:     ||:                   
 Frog    26 SGRFHGPAM--RSKGFAITDLLGLEAELQPPSLS-LPSCEGPGASLGGVSLANGSLPLGLGFLCG 87

  Fly   146 --------TECTEDSNTPKLAP----------DKPLLPEECVSPEPSRNREHCD-PLDTSLVNTK 191
                    |.|...::.|.|.|          ||   .:|.:|.:.|...:..| ...:|....|
 Frog    88 FASQQPPGTTCLLPTHIPFLQPRADHQYLHASDK---HKENISDDDSLLGDKNDLKASSSQAKRK 149

  Fly   192 QRRSRTNFTLDQLNELERLFEETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKHE 251
            :||.||.||..||.|||:.|.|.||||.:.||.|:.:..|.|.|:||||||||||.||.|
 Frog   150 KRRHRTVFTAHQLEELEKAFNEAHYPDVYAREMLALKTELPEDRIQVWFQNRRAKWRKRE 209

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34367NP_001097140.1 Homeodomain 193..249 CDD:459649 33/55 (60%)
OAR 392..410 CDD:461067
vsx1NP_001093670.1 Homeodomain 151..207 CDD:459649 33/55 (60%)
Blue background indicates that the domain is not in the aligned region.

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