DRSC/TRiP Functional Genomics Resources

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Protein Alignment lmgA and Rbx1

DIOPT Version :9

Sequence 1:NP_001097122.1 Gene:lmgA / 5740853 FlyBaseID:FBgn0250903 Length:85 Species:Drosophila melanogaster
Sequence 2:NP_062686.1 Gene:Rbx1 / 56438 MGIID:1891829 Length:108 Species:Mus musculus


Alignment Length:83 Identity:31/83 - (37%)
Similarity:44/83 - (53%) Gaps:8/83 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 IKSWTGVATWRWIANDENCGICRMSFESTCPEC-----ALPGDDCPLVWGVCSHCFHMHCIVKWL 64
            :|.|..||.|.|....:||.|||......|.||     :...::|.:.||||:|.||.|||.:||
Mouse    24 VKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL 88

  Fly    65 NLQPLNKQCPMCRQSWKF 82
            ..:.:   ||:..:.|:|
Mouse    89 KTRQV---CPLDNREWEF 103

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lmgANP_001097122.1 RING_Ubox 1..82 CDD:418438 30/81 (37%)
Rbx1NP_062686.1 mRING-H2-C3H2C2D_RBX1 40..101 CDD:319399 23/63 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5194
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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