DRSC/TRiP Functional Genomics Resources

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Protein Alignment lmgA and Rnf7

DIOPT Version :9

Sequence 1:NP_001097122.1 Gene:lmgA / 5740853 FlyBaseID:FBgn0250903 Length:85 Species:Drosophila melanogaster
Sequence 2:NP_035409.1 Gene:Rnf7 / 19823 MGIID:1337096 Length:113 Species:Mus musculus


Alignment Length:79 Identity:29/79 - (36%)
Similarity:41/79 - (51%) Gaps:5/79 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 TIKSWTGVATWRWIANDENCGICRMSFESTCPECALPG--DDCPLVWGVCSHCFHMHCIVKWLNL 66
            ::|.|..||.|.|....:.|.|||:.....|..|....  :||.:|||.|:|.||..|:..|:. 
Mouse    31 SLKKWNAVAMWSWDVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK- 94

  Fly    67 QPLNKQCPMCRQSW 80
              .|.:||:|:|.|
Mouse    95 --QNNRCPLCQQDW 106

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lmgANP_001097122.1 RING_Ubox 1..82 CDD:418438 29/79 (37%)
Rnf7NP_035409.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..26
RING-H2_RBX2 47..106 CDD:319380 22/61 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5194
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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