DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shawl and kch

DIOPT Version :10

Sequence 1:NP_001097131.2 Gene:Shawl / 5740840 FlyBaseID:FBgn0085395 Length:937 Species:Drosophila melanogaster
Sequence 2:NP_415766.1 Gene:kch / 945841 ECOCYCID:EG11606 Length:417 Species:Escherichia coli


Alignment Length:165 Identity:39/165 - (23%)
Similarity:70/165 - (42%) Gaps:27/165 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   352 IIDFTATLSFYTDVMQRMGEYTGLLEAFSIVRIMRLFKLTRHSPGLRILIHTFKASAKELTLLVF 416
            :|....||.||..:...:|     ...|::|.::.|.|...||            ||...|:..|
E. coli    97 LIALIYTLHFYPWLKFSIG-----FCIFTLVFLLILRKDFSHS------------SAAAGTIFAF 144

  Fly   417 FLVLGIVFFASLAYYAEKLQDNPDNQFKSIPLGLWWAIVTMTTVGYGDVAPKTYPGMFVGALCAL 481
            .....::|:::  |.|..|.:..:.:.:|:....:::|.||:||||||:.|.:...........:
E. coli   145 ISFTTLLFYST--YGALYLSEGFNPRIESLMTAFYFSIETMSTVGYGDIVPVSESARLFTISVII 207

  Fly   482 AGVLTIALPV-----PVIVSNFSMFY---SHTQAR 508
            :|:...|..:     |:|...|:...   :||..|
E. coli   208 SGITVFATSMTSIFGPLIRGGFNKLVKGNNHTMHR 242

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawlNP_001097131.2 BTB_Shaw-like 4..115 CDD:349723
Ion_trans 307..506 CDD:459842 37/161 (23%)
kchNP_415766.1 PRK10537 3..402 CDD:236711 39/165 (24%)
Blue background indicates that the domain is not in the aligned region.

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