DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shawl and kcng4b

DIOPT Version :9

Sequence 1:NP_001097131.2 Gene:Shawl / 5740840 FlyBaseID:FBgn0085395 Length:937 Species:Drosophila melanogaster
Sequence 2:XP_009301775.1 Gene:kcng4b / 566228 ZFINID:ZDB-GENE-130530-634 Length:535 Species:Danio rerio


Alignment Length:552 Identity:139/552 - (25%)
Similarity:214/552 - (38%) Gaps:158/552 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDGENRIILNVSGIRYETYKATLKKIPATRLSRL---------TEALANYDPVLNEYFFDRHPGV 56
            :|.....::||.|.||....:||.:.|.:||.:|         .:...:||....|:||||....
Zfish    56 VDHSKLALINVGGDRYTFPWSTLDEFPLSRLGQLRHCSSPDDIAQLCDDYDEARREFFFDRSSVA 120

  Fly    57 FTQILNYYRTGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQNTLAILDKLD-- 119
            |..|||:...|||.....||.....:||.:||:|...:|.||            ...:|.:::  
Zfish   121 FRVILNFLAAGKLRLLRQVCAVSLSDELTYWGIDPVHMERCC------------RRKLLSRVEDV 173

  Fly   120 IENEKPTEEQIARLFGFEEALSNGELNCWQRIKPKIWAMFDEPSSSTGAKIVAGMSVFFIFVSVI 184
            .|.:|..:|:..:....:..|:..:  .:.|:..::..:.:.|.|....|:.|..||..|.|:||
Zfish   174 AEKKKKEDERKQKRHALQRPLAQDK--GFIRLMNRLQEIVENPHSGWAGKLFACFSVVMIAVTVI 236

  Fly   185 SFCLKTHPGFRVDLPSGAHDAHGPGAGGPPHGHDPMGEPPQTHQYHQHSITPPSGSIGPTFRVTN 249
            |.|:.|.|                       .|:..||                           
Zfish   237 SLCISTLP-----------------------DHENRGE--------------------------- 251

  Fly   250 YTSYSSGNFTASGQATPIATIKGGQRQRLKRNINGSILNEFIEEKILGHNGRRKHGWIETYGQPH 314
                              .|.|       .|||                                
Zfish   252 ------------------CTEK-------CRNI-------------------------------- 259

  Fly   315 EAFFYVELVCNVWFFIEVIIRLIVSPNLWQFIKSPVNIIDFTATLSFYTDV------------MQ 367
               |.||.||..||.:|.::|.:.:.:..||:::|:|:||..|.|.:|..:            :.
Zfish   260 ---FIVETVCVAWFSMEFLLRFLQAESKMQFLRNPLNVIDVIAILPYYISLVVDSEDTSDEAELN 321

  Fly   368 RMGEYTGLLEAFSIV-------RIMRLFKLTRHSPGLRILIHTFKASAKELTLLVFFLVLGIVFF 425
            ..|...|.|:...::       ||:.:.:|.|||.||:.|..|.:.|.:|..||:.||.:.:..|
Zfish   322 GAGTSRGYLDKLGLILRVMRALRILYVMRLARHSLGLQTLGLTMQRSMREFGLLLLFLCVAVALF 386

  Fly   426 ASLAYYAEKL----QDNPDNQFKSIPLGLWWAIVTMTTVGYGDVAPKTYPGMFVGALCALAGVLT 486
            :.|.:.|||.    :....|.|.|||...||||::||||||||:.|.:.||..|.....|:|:|.
Zfish   387 SPLVHLAEKEFSKGKATGPNSFSSIPASYWWAIISMTTVGYGDMVPYSIPGQVVAFSSILSGILI 451

  Fly   487 IALPVPVIVSNFSMFYSHTQARSKLPKKRRRV 518
            :|.|...|...||..|...:...::..|..||
Zfish   452 MAFPATSIFHVFSRSYHELKREQEMIYKEERV 483

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawlNP_001097131.2 BTB 7..99 CDD:197585 34/100 (34%)
BTB_2 7..97 CDD:280393 33/98 (34%)
Ion_trans 307..506 CDD:278921 72/221 (33%)
Ion_trans_2 <449..499 CDD:285168 22/49 (45%)
kcng4bXP_009301775.1 BTB_2 64..161 CDD:280393 33/96 (34%)
BTB <102..163 CDD:197585 24/72 (33%)
Ion_trans 259..471 CDD:278921 73/246 (30%)
Ion_trans_2 <414..465 CDD:285168 23/50 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.900

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