DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shawl and kcng3

DIOPT Version :9

Sequence 1:NP_001097131.2 Gene:Shawl / 5740840 FlyBaseID:FBgn0085395 Length:937 Species:Drosophila melanogaster
Sequence 2:XP_021336001.1 Gene:kcng3 / 565643 ZFINID:ZDB-GENE-111111-9 Length:422 Species:Danio rerio


Alignment Length:533 Identity:141/533 - (26%)
Similarity:217/533 - (40%) Gaps:153/533 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 GENRIILNVSGIRYETYKATLKKIPATRLSRL---------TEALANYDPVLNEYFFDRHPGVFT 58
            |:|..||||.|.:|...:..:|..|..|:|||         .|...:||...||:|||||...|.
Zfish     4 GKNICILNVGGTKYAFTREVIKDFPLRRVSRLHSCSSEKEVLEVCDDYDRERNEFFFDRHSEAFV 68

  Fly    59 QILNYYRTGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQNTLAILDKLDIENE 123
            .|:.|.|:|||.:...:|...|..|:.:|||:|:.:|.||............|....|.:..|.|
Zfish    69 FIMLYVRSGKLRFVPQMCELSFYNEMIYWGLESSHLEFCCQRRLEDRMSDTYTYFSEDDMKAEVE 133

  Fly   124 -KPTEEQIARLFGFEEALSNGELNCWQRIKPKIWAMFDEPSSSTGAKIVAGMSVFFIFVSVISFC 187
             :..|||::|.     |...|.....:|::    ..|:||:||..|:|:|.:||.|:.:|::..|
Zfish   134 SRGEEEQVSRF-----APDRGSARWLERMR----RTFEEPASSIAAQILASVSVVFVIMSMVILC 189

  Fly   188 LKTHPGFRVDLPSGAHDAHGPGAGGPPHGHDPMGEPPQTHQYHQHSITPPSGSIGPTFRVTNYTS 252
            ..|.|.:                           :..:.:...:|.|                  
Zfish   190 ASTLPDW---------------------------DTAKNNTVEEHRI------------------ 209

  Fly   253 YSSGNFTASGQATPIATIKGGQRQRLKRNINGSILNEFIEEKILGHNGRRKHGWIETYGQPHEAF 317
                                                                             
Zfish   210 ----------------------------------------------------------------- 209

  Fly   318 FYVELVCNVWFFIEVIIRLIVSPNLWQFIKSPVNIIDFTATLSFYTDV-----------MQRMGE 371
              :|.||..||..|.|:|.|||.:..:|::.|:||||..|...:|..|           :||.| 
Zfish   210 --IEAVCIGWFTAECIVRFIVSRDKCEFVRRPLNIIDLLAITPYYVSVAMTALTGENPQLQRAG- 271

  Fly   372 YTGLLEAFSIVRIMRLF---KLTRHSPGLRILIHTFKASAKELTLLVFFLVLGIVFFASLAYYAE 433
                 ....::|:||:|   ||.||..||:.|..|.:...:|:.:|:.|:.:.:..|::||...|
Zfish   272 -----VTLRVLRMMRIFWLIKLARHFLGLQTLGLTLRRCYREMVMLLVFVCVAMAIFSALAQLLE 331

  Fly   434 KLQD--NPDNQFKSIPLGLWWAIVTMTTVGYGDVAPKTYPGMFVGALCALAGVLTIALPVPVIVS 496
            ...|  ..:..:.|||...||.|::||||||||:.|.|.||..:|.:|.::|::.:|||:..|..
Zfish   332 HGLDLETSNEDYASIPASCWWVIISMTTVGYGDMYPITIPGRVLGGVCVVSGIVLLALPITFIYH 396

  Fly   497 NFSMFYSHTQARS 509
            :|...|...:.||
Zfish   397 SFVQCYHELKFRS 409

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawlNP_001097131.2 BTB 7..99 CDD:197585 38/100 (38%)
BTB_2 7..97 CDD:280393 37/98 (38%)
Ion_trans 307..506 CDD:278921 70/214 (33%)
Ion_trans_2 <449..499 CDD:285168 22/49 (45%)
kcng3XP_021336001.1 BTB 9..107 CDD:321966 37/97 (38%)
Ion_trans 170..406 CDD:306908 82/353 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D818306at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
33.010

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