DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shawl and kcns3a

DIOPT Version :9

Sequence 1:NP_001097131.2 Gene:Shawl / 5740840 FlyBaseID:FBgn0085395 Length:937 Species:Drosophila melanogaster
Sequence 2:NP_001122196.1 Gene:kcns3a / 565375 ZFINID:ZDB-GENE-080723-45 Length:499 Species:Danio rerio


Alignment Length:538 Identity:148/538 - (27%)
Similarity:238/538 - (44%) Gaps:158/538 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 ENRIILNVSGIRYETYKATLKKIPATRLSRL----TEALA-----NYDPVLNEYFFDRHPGVFTQ 59
            |:.|.|||.|.:.:..:..|::.|.|||:||    :||..     :|.....||:|||:|..|..
Zfish    14 ESFINLNVGGFKQQVERVVLQRFPHTRLARLLYCSSEAAILQLCDDYAAADREYYFDRNPCFFRY 78

  Fly    60 ILNYYRTGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHR------------DTQNTL 112
            :||:|.|||:|...::|...|.:|||:||:....::.||.:.:...:            |.||.|
Zfish    79 VLNFYHTGKIHLMEELCVFSFSQELEYWGIKELHLDTCCSNRFQEQKENMGDPDWGNEDDPQNQL 143

  Fly   113 AILDKLDIENEKPTEEQIARLFGFEEALSNGELNCWQRIKPK-IWAMFDEPSSSTGAKIVAGMSV 176
            .  |.||...|:        |..|::.|...| ..|...|.| :|...:.|..|..|||:|..|:
Zfish   144 Q--DSLDSSMEE--------LSAFDKDLEKFE-GTWCAEKRKELWLRLENPGYSRSAKILAVFSL 197

  Fly   177 FFIFVSVISFCLKTHPGFRVDLPSGAHDAHGPGAGGPPHGHDPMGEPPQTHQYHQHSITPPSGSI 241
            ..:.:|:|:.|:.:.|.|.                                              
Zfish   198 SVVLISIIAMCIHSMPEFH---------------------------------------------- 216

  Fly   242 GPTFRVTNYTSYSSGNFTASGQATPIATIKGGQRQRLKRNINGSILNEFIEEKILGHNGRRKHGW 306
                                            |:...::.:...:|:.|                
Zfish   217 --------------------------------QKDANEKEVENPVLDVF---------------- 233

  Fly   307 IETYGQPHEAFFYVELVCNVWFFIEVIIRLIVSPNLWQFIKSPVNIIDFTATLSFY--------- 362
             ||:             |.:||.:|.|:||:|:|.|.:||.:.:|:|||.:.:.||         
Zfish   234 -ETF-------------CVLWFSLEFIVRLVVTPCLRKFICNALNMIDFASIVPFYATLAFEKVD 284

  Fly   363 ---TDVMQRMGEYTGLLEAFSIVRIMRLFKLTRHSPGLRILIHTFKASAKELTLLVFFLVLGIVF 424
               ::.::.:|....:|.   ::||.|:.||.|||.|||.|..|.:.|..|:.||:.||.:||..
Zfish   285 PEESEELENVGRVVQILR---LMRIFRILKLARHSVGLRSLGATLRHSYHEVGLLILFLSVGISI 346

  Fly   425 FASLAYYAEKLQDNPDNQFKSIPLGLWWAIVTMTTVGYGDVAPKTYPGMFVGALCALAGVLTIAL 489
            |:.|.|:.|:  ::.:::.::||:|.|||.::||||||||..|.|.||..:|.||.:.|:|.:||
Zfish   347 FSVLIYFVER--EDHESELQTIPVGWWWATISMTTVGYGDTYPVTLPGKLIGTLCIICGLLVVAL 409

  Fly   490 PVPVIVSNFSMFYSHTQA 507
            |:.:|.:.||.:|...:|
Zfish   410 PISIIFNKFSKYYQRQKA 427

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawlNP_001097131.2 BTB 7..99 CDD:197585 37/100 (37%)
BTB_2 7..97 CDD:280393 36/98 (37%)
Ion_trans 307..506 CDD:278921 77/210 (37%)
Ion_trans_2 <449..499 CDD:285168 25/49 (51%)
kcns3aNP_001122196.1 BTB_2 17..116 CDD:308049 36/98 (37%)
Ion_trans 189..426 CDD:306908 90/349 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D818306at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.910

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