DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shawl and kcng2

DIOPT Version :9

Sequence 1:NP_001097131.2 Gene:Shawl / 5740840 FlyBaseID:FBgn0085395 Length:937 Species:Drosophila melanogaster
Sequence 2:XP_690900.2 Gene:kcng2 / 562421 ZFINID:ZDB-GENE-100701-1 Length:546 Species:Danio rerio


Alignment Length:608 Identity:156/608 - (25%)
Similarity:247/608 - (40%) Gaps:172/608 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 ILNVSGIRYETYKATLKKIPATRLSRL---------TEALANYDPVLNEYFFDRHPGVFTQILNY 63
            |:||.||||....:||::.|.|||.||         .:...:||...||:||||.|..|..|:.:
Zfish    73 IINVGGIRYRIPWSTLEEFPLTRLGRLHNCNNAEEILDLCDDYDARCNEFFFDRSPSAFRSIVTF 137

  Fly    64 YRTGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQNTLAILDKLDIENEKPTEE 128
            ...|||....::|...|:|||.:||::...:|.||.....:.::.|.     ::|.:|.|   |.
Zfish   138 LAAGKLRLLREMCALSFQEELSYWGVEEASLEWCCLRKLRLRQEEQR-----ERLRLEEE---EA 194

  Fly   129 QIARLFGFEEALS-----NGELN-CWQRIKPKIWAMFDEPSSSTGAKIVAGMSVFFIFVSVISFC 187
            ::......|||.:     .|.|: |...::.    |.:.|.|....||.|.:||.|:.::.::.|
Zfish   195 ELTSPHSCEEAPAVGSPEEGRLSGCMHSLRD----MVENPHSGIPGKIFACLSVVFVAITAVTLC 255

  Fly   188 LKTHPGFRVDLPSGAHDAHGPGAGGPPHGHDPMGEPPQTHQYHQHSITPPSGSIGPTFRVTNYTS 252
            :.|.|..|                                                         
Zfish   256 VSTMPDLR--------------------------------------------------------- 263

  Fly   253 YSSGNFTASGQATPIATIKGGQRQRLKRNINGSILNEFIEEKILGHNGRRKHGWIETYGQPHEAF 317
                                                   ||:..|...:|.:.           .
Zfish   264 ---------------------------------------EEEERGECSQRCYN-----------I 278

  Fly   318 FYVELVCNVWFFIEVIIRLIVSPNLWQFIKSPVNIIDFTATLSFY-TDVMQRMG----------- 370
            |.:|.||..||.:|.::|.|.:.:...|:::|:||||..|.|.:| |.::..|.           
Zfish   279 FVLETVCVGWFSLEFLLRFIQTQSKCTFLRTPLNIIDVVAILPYYITLIVDSMSVGDRPAGSGNN 343

  Fly   371 --EYTGLLEAFSIVRIMRLF---KLTRHSPGLRILIHTFKASAKELTLLVFFLVLGIVFFASLAY 430
              |..||:  ..::|.:|:|   :|.|||.||:.|..|.:...:|..||:.||.:.:..|:.|.:
Zfish   344 YLEKVGLV--LRVLRALRIFYVMRLARHSLGLQTLGLTVRRCTREFGLLLLFLCVAMALFSPLVF 406

  Fly   431 YAEKLQDNPDNQFKSIPLGLWWAIVTMTTVGYGDVAPKTYPGMFVGALCALAGVLTIALPVPVIV 495
            .||. :.....:|.|||...|||:::||||||||:.|::.||..|.....|:|:|.:|.||.   
Zfish   407 LAES-ELGAKQEFTSIPGSYWWAVISMTTVGYGDMVPRSIPGQVVALSSILSGILLMAFPVT--- 467

  Fly   496 SNFSMFYSHTQARSKLPKKRRRVLPVEQPRRKR-EPTAPHRGRTNAIKQTPPTGPGLVAGGVVPV 559
               |:|  ||.:||.|..|.      ||.|..| :|.:....::...:.:..|...:  .|:...
Zfish   468 ---SIF--HTFSRSYLELKE------EQNRATRHKPDSQDSTKSQNSEDSQDTDSSI--HGITET 519

  Fly   560 GAGGPGLGGHAVGHSAAGAPMFK 582
            .|.. .|...:|..::.|||..:
Zfish   520 TAVS-ALHRRSVAVASQGAPQLR 541

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawlNP_001097131.2 BTB 7..99 CDD:197585 38/99 (38%)
BTB_2 7..97 CDD:280393 37/97 (38%)
Ion_trans 307..506 CDD:278921 71/215 (33%)
Ion_trans_2 <449..499 CDD:285168 21/49 (43%)
kcng2XP_690900.2 BTB 72..172 CDD:197585 37/98 (38%)
BTB_2 73..171 CDD:280393 37/97 (38%)
Ion_trans 273..481 CDD:278921 76/229 (33%)
Ion_trans_2 <416..475 CDD:285168 29/66 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.900

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