DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shawl and kcnc3a

DIOPT Version :9

Sequence 1:NP_001097131.2 Gene:Shawl / 5740840 FlyBaseID:FBgn0085395 Length:937 Species:Drosophila melanogaster
Sequence 2:XP_009297818.1 Gene:kcnc3a / 559096 ZFINID:ZDB-GENE-100901-1 Length:666 Species:Danio rerio


Alignment Length:652 Identity:243/652 - (37%)
Similarity:329/652 - (50%) Gaps:159/652 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 DGENRIILNVSGIRYETYKATLKKIPATRLSRLTE--ALAN--YDPVLNEYFFDRHPGVFTQILN 62
            |.| :|::|..|||:|||::|||.:|.||||.|||  |.:|  |||..:|:||||||..|..|||
Zfish    34 DSE-KIVINCGGIRHETYRSTLKTLPGTRLSWLTEPDAFSNFDYDPKSDEFFFDRHPNTFAFILN 97

  Fly    63 YYRTGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQNTLAILDKLDIENEKPTE 127
            ||||||||.|:|||||||||||.|||:|...||.|||..|..|||.:..   ||..:.....|.|
Zfish    98 YYRTGKLHCPSDVCGPLFEEELAFWGIDETDVEACCWMNYRQHRDAEEA---LDSFETPEPDPPE 159

  Fly   128 EQIARLFGFEEALSNGELN--C----------WQRIKPKIWAMFDEPSSSTGAKIVAGMSVFFIF 180
            :..|...|     ::|:|.  |          |...:|.:||:|::|.||..|:.||..|:.||.
Zfish   160 DDPALTGG-----ADGDLKRLCLQEDGRNPSRWSTWQPWVWALFEDPYSSKYARYVAFGSLLFIL 219

  Fly   181 VSVISFCLKTHPGFRVDLPSGAHDAHGPGAGGPPHGHDPMGEPPQTHQYHQHSITPPSGSIGPTF 245
            :|:.:|||:||..|.                                                  
Zfish   220 ISISTFCLETHEAFN-------------------------------------------------- 234

  Fly   246 RVTNYTSYSSGNFTASGQATPIATIKGGQRQRLKRNINGSILNEFIEEKILGHNGRRKHGWIETY 310
                 |.|:.         |...|:             |::..|.:..:::..|      |:.  
Zfish   235 -----TIYNK---------TENVTV-------------GNVTREEVVFEVVTDN------WLT-- 264

  Fly   311 GQPHEAFFYVELVCNVWFFIEVIIRLIVSPNLWQFIKSPVNIIDFTATLSFYTDV------MQRM 369
                    |||.||.|||.|||..|:|..|:..:|.||.:|||||.|.|.||.::      .:..
Zfish   265 --------YVEGVCVVWFTIEVFTRVIFCPDKAEFFKSSLNIIDFVAILPFYLEMALSGLSSKAA 321

  Fly   370 GEYTGLLEAFSIVRIMRLFKLTRHSPGLRILIHTFKASAKELTLLVFFLVLGIVFFASLAYYAEK 434
            .:..|.|.....|||:|:||||||..|||:|.||.:||..|..||:.||.||::.||::.||||:
Zfish   322 KDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLLLIIFLALGVLIFATMIYYAER 386

  Fly   435 LQDNPDN-------QFKSIPLGLWWAIVTMTTVGYGDVAPKTYPGMFVGALCALAGVLTIALPVP 492
            :..:||:       .||:||:|.|||:|||||:||||:.|:|:.||.||||||||||||||:|||
Zfish   387 IGADPDDPTASAHTAFKNIPIGFWWAVVTMTTLGYGDMYPETWSGMLVGALCALAGVLTIAMPVP 451

  Fly   493 VIVSNFSMFYSHTQARSKLPKKRRRVLPVEQPRRKREPTAPHRGRTNAIKQTPPTGPGLVAGGVV 557
            |||:||.|:||...|:.|||||:.:.:|     |..:|.:|:..:.:|:... ...|..:.|.| 
Zfish   452 VIVNNFGMYYSLAMAKQKLPKKKNKHIP-----RAPQPGSPNYCKPDALAMA-TASPHRIMGNV- 509

  Fly   558 PVGAGGPGLGGHAVGHSAAG-APMFKDAFGGAKIGTVNVNGVNVIGLHPAQRTTTTMAMAMNEAD 621
                    ||...|..|.|| .|:.::..       :.:|..:     ..|......|...||..
Zfish   510 --------LGSMVVSGSMAGDCPLAQEEI-------IEINRAD-----SKQNGDAANAALANEDC 554

  Fly   622 PT 623
            ||
Zfish   555 PT 556

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawlNP_001097131.2 BTB 7..99 CDD:197585 62/95 (65%)
BTB_2 7..97 CDD:280393 61/93 (66%)
Ion_trans 307..506 CDD:278921 107/211 (51%)
Ion_trans_2 <449..499 CDD:285168 38/49 (78%)
kcnc3aXP_009297818.1 Potassium_chann 1..29 CDD:314363
BTB_2 38..132 CDD:308049 61/93 (66%)
Ion_trans 207..465 CDD:306908 128/350 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 250 1.000 Domainoid score I2066
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 460 1.000 Inparanoid score I1537
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D331021at33208
OrthoFinder 1 1.000 - - FOG0000990
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11537
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1010.020

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