DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shawl and kcna4

DIOPT Version :10

Sequence 1:NP_001097131.2 Gene:Shawl / 5740840 FlyBaseID:FBgn0085395 Length:937 Species:Drosophila melanogaster
Sequence 2:XP_005169005.1 Gene:kcna4 / 559036 ZFINID:ZDB-GENE-121127-2 Length:667 Species:Danio rerio


Alignment Length:608 Identity:191/608 - (31%)
Similarity:266/608 - (43%) Gaps:192/608 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 RIILNVSGIRYETYKATLKKIPATRLSRLTEALANYDPVLNEYFFDRHPGVFTQILNYYRT-GKL 69
            |:::||||:::||...||.:.|.|.|....:....:||:.|||||||:...|..||.:|:: |:|
Zfish   206 RVVINVSGLKFETQLKTLAQFPDTLLGDPEKRSRYFDPLRNEYFFDRNRPSFDAILYFYQSGGRL 270

  Fly    70 HYPTDVCGPLFEEELEFWGL-DSNQVEPCCWSTYSIHRDTQNTLAILDKLDIENEKPTEEQIARL 133
            ..|.:|...:|.||::|:.| |...::         .|:.:..:.       |.|||..|     
Zfish   271 KRPVNVPFDIFSEEVKFYELGDEAMLK---------FREDEGFVK-------EEEKPLPE----- 314

  Fly   134 FGFEEALSNGELNCWQRIKPKIWAMFDEPSSSTGAKIVAGMSVFFIFVSVISFCLKTHPGFRVDL 198
                           ...|.:||.:|:.|.||:.|:.:|.:||..|.:|::.|||:|.|.||.| 
Zfish   315 ---------------DEFKRQIWLLFEYPESSSPARGIAVVSVLVIVISIVIFCLETLPEFRDD- 363

  Fly   199 PSGAHDAHGPGAGGPPHGHDPMGEPPQTHQYHQHSITPPSGSIGPTFRVTNYTSYSSGNFTASGQ 263
                                                                             
Zfish   364 ----------------------------------------------------------------- 363

  Fly   264 ATPIATIKGGQRQRLKRNINGSILNEFIEEKILGHNGRRKHGWIETYGQPHEAFFYVELVCNVWF 328
                                    .||:   |.|.|..:.......:..|   ||.||.||.:||
Zfish   364 ------------------------KEFL---IPGKNSTQADNGFTPFNDP---FFIVETVCIIWF 398

  Fly   329 FIEVIIRLIVSPNLWQFIKSPVNIIDFTATLSFY----TDVMQRMGE-----YTGLLEAFSIVRI 384
            ..|:|:|...||:...|.|:.:|.||..:.|.::    ||:.|:.|.     ...:|....:||:
Zfish   399 SFEIIVRFFASPSKADFFKNVMNTIDIVSILPYFITLGTDLAQQQGNGQQAMSFAILRIIRLVRV 463

  Fly   385 MRLFKLTRHSPGLRILIHTFKASAKELTLLVFFLVLGIVFFASLAYYAEKLQDNPDNQFKSIPLG 449
            .|:|||:|||.||:||.||.:||.:||.||:||||:|::.|:|..|:||  .|.|.:||.|||..
Zfish   464 FRIFKLSRHSKGLQILGHTLRASMRELALLIFFLVIGVILFSSAVYFAE--ADEPTSQFTSIPDA 526

  Fly   450 LWWAIVTMTTVGYGDVAPKTYPGMFVGALCALAGVLTIALPVPVIVSNFSMFY-SHTQARSKLPK 513
            .|||:||||||||||:.|.|..|..||:|||:|||||||||||||||||:.|| ..|....:.| 
Zfish   527 FWWAVVTMTTVGYGDMKPITVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDNEDQAP- 590

  Fly   514 KRRRVLPVEQPRRKREPTAPH--------RGRTNAIKQTPPTGPGL-----------------VA 553
                  .||||    .|..|:        :|        .|:|..|                 :.
Zfish   591 ------AVEQP----PPGCPYFPDFLRKFKG--------SPSGSSLGDKAAEYMEMEEGVTESLC 637

  Fly   554 GGVV--PVGAGGPGLGGHAVGHS 574
            ||..  |....|..|||....||
Zfish   638 GGDTQSPSRGNGTDLGGKNSSHS 660

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawlNP_001097131.2 BTB_Shaw-like 4..115 CDD:349723 36/110 (33%)
Ion_trans 307..506 CDD:459842 103/208 (50%)
kcna4XP_005169005.1 K_channel_TID 1..>21 CDD:429748
BTB_POZ 205..331 CDD:453885 46/160 (29%)
Ion_trans 382..582 CDD:459842 103/204 (50%)
Blue background indicates that the domain is not in the aligned region.

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