DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shawl and kcns3b

DIOPT Version :9

Sequence 1:NP_001097131.2 Gene:Shawl / 5740840 FlyBaseID:FBgn0085395 Length:937 Species:Drosophila melanogaster
Sequence 2:NP_001032460.1 Gene:kcns3b / 558674 ZFINID:ZDB-GENE-051120-78 Length:424 Species:Danio rerio


Alignment Length:551 Identity:145/551 - (26%)
Similarity:232/551 - (42%) Gaps:180/551 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 ENRIILNVSGIRYETYKATLKKIPATRLSRL---------TEALANYDPVLNEYFFDRHPGVFTQ 59
            |:.:.||:.||.::..:..|.:.|.||:::|         .|...:|.|...||:|||.|.||..
Zfish    14 EDLVNLNIGGIHHKVERCVLLRFPHTRVAQLIQCHSDAAILELCDDYSPTEQEYYFDRSPQVFHC 78

  Fly    60 ILNYYRTGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCC--WSTYSIHRDTQNTLAILDKLDIEN 122
            :||:||||..|...::|...|.:|:|:|||....::.||  |              .|::.| |:
Zfish    79 VLNFYRTGHFHTLEELCVFCFSQEIEYWGLCELDLDACCLEW--------------FLERKD-EH 128

  Fly   123 EKPTEEQIARLFGFEEALSNGEL-----NCWQR-------IKPKIWAMFDEPSSSTGAKIVAGMS 175
            |..:..|.::      ..|:||:     :.|:.       ::..:|...::|..|..::.||.:|
Zfish   129 ELNSSGQSSK------NASSGEISVTSEDLWKSEGMRCSDVRKLMWETLEDPQHSRCSRGVAAVS 187

  Fly   176 VFFIFVSVISFCLKTHPGFRVDLPSGAHDAHGPGAGGPPHGHDPMGEPPQTHQYHQHSITPPSGS 240
            |..|.:|:::.|:.:.|.||.                            ||...|          
Zfish   188 VLVILISILAMCVHSLPEFRY----------------------------QTDGEH---------- 214

  Fly   241 IGPTFRVTNYTSYSSGNFTASGQATPIATIKGGQRQRLKRNINGSILNEFIEEKILGHNGRRKHG 305
                                                        |:|:.                
Zfish   215 --------------------------------------------SVLDS---------------- 219

  Fly   306 WIETYGQPHEAFFYVELVCNVWFFIEVIIRLIVSPNLWQFIKSPVNIIDFTATLSFY-TDVMQRM 369
                          |||.|.|:|.:|..:|:|.:|...:|:.:|:|:||..:.|.|| |..::|:
Zfish   220 --------------VELFCIVFFSVEFFLRVIAAPQPLRFLGNPLNMIDVASILPFYITLAVERL 270

  Fly   370 GE--------YTGLLEAFSIVRIMRLF---KLTRHSPGLRILIHTFKASAKELTLLVFFLVLGIV 423
            .|        ...:.....::|:||.|   ||.|||.|:|....|......|:.|||.|:.:||.
Zfish   271 DEEDKEENQSLVNMGRVVQVLRLMRSFRVLKLARHSEGMRAFGETLMNCQCEVGLLVLFITVGIS 335

  Fly   424 FFASLAYYAEKLQDNPDNQFKSIPLGLWWAIVTMTTVGYGDVAPKTYPGMFVGALCALAGVLTIA 488
            ||::..||.||  :...:|..|||:..||.|::|||||||||.|.|..|..|..:|.|.|:|.|:
Zfish   336 FFSTFIYYTEK--EEASSQLSSIPICWWWGIISMTTVGYGDVYPLTVAGRIVATVCILCGLLVIS 398

  Fly   489 LPVPVIVSNFSMFYSHTQARSKLPKKRRRVL 519
            ||:.:|::|||.::          :|.|:.|
Zfish   399 LPITIIMNNFSKYF----------EKNRKCL 419

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawlNP_001097131.2 BTB 7..99 CDD:197585 36/102 (35%)
BTB_2 7..97 CDD:280393 34/98 (35%)
Ion_trans 307..506 CDD:278921 77/210 (37%)
Ion_trans_2 <449..499 CDD:285168 25/49 (51%)
kcns3bNP_001032460.1 BTB 17..117 CDD:197585 34/99 (34%)
BTB_2 17..116 CDD:280393 34/98 (35%)
Ion_trans 205..414 CDD:278921 84/332 (25%)
Ion_trans_2 329..410 CDD:285168 39/82 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D818306at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.910

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