DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shawl and KCNS3

DIOPT Version :9

Sequence 1:NP_001097131.2 Gene:Shawl / 5740840 FlyBaseID:FBgn0085395 Length:937 Species:Drosophila melanogaster
Sequence 2:NP_001269357.1 Gene:KCNS3 / 3790 HGNCID:6302 Length:491 Species:Homo sapiens


Alignment Length:539 Identity:141/539 - (26%)
Similarity:227/539 - (42%) Gaps:149/539 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 ENRIILNVSGIRYETYKATLKKIPATRLSRL---------TEALANYDPVLNEYFFDRHPGVFTQ 59
            |..:.|||.|.:....::||.:.|.|||.:|         .|...:|.....||:|||:|.:|..
Human    14 EELVNLNVGGFKQSVDQSTLLRFPHTRLGKLLTCHSEEAILELCDDYSVADKEYYFDRNPSLFRY 78

  Fly    60 ILNYYRTGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQNTLAILDKL--DIEN 122
            :||:|.|||||...::|...|.:|:|:||::...::.||.:.|. .|..:|.....|:.  |:..
Human    79 VLNFYYTGKLHVMEELCVFSFCQEIEYWGINELFIDSCCSNRYQ-ERKEENHEKDWDQKSHDVST 142

  Fly   123 EKPTEEQIARLFGFEEALSNGELNCWQRIKPKIWAMFDEPSSSTGAKIVAGMSVFFIFVSVISFC 187
            :...||...    ||:.|...:...:.:::.|||...:.|:....||::|..|:..:..|:::.|
Human   143 DSSFEESSL----FEKELEKFDTLRFGQLRKKIWIRMENPAYCLSAKLIAISSLSVVLASIVAMC 203

  Fly   188 LKTHPGFRVDLPSGAHDAHGPGAGGPPHGHDPMGEPPQTHQYHQHSITPPSGSIGPTFRVTNYTS 252
            :                                                                
Human   204 V---------------------------------------------------------------- 204

  Fly   253 YSSGNFTASGQATPIATIKGGQRQRLKRNINGSILNEFIEEKILGHNGRRKHGWIETYGQPHEAF 317
            :|...|                     :|.:|.:.:..:|.                        
Human   205 HSMSEF---------------------QNEDGEVDDPVLEG------------------------ 224

  Fly   318 FYVELVCNVWFFIEVIIRLIVSPNLWQFIKSPVNIIDFTATLSFY-----------TDVMQRMGE 371
              ||:.|..||..|:.:||..:|...:|.|:|:|||||.:.:.||           ::.::.||:
Human   225 --VEIACIAWFTGELAVRLAAAPCQKKFWKNPLNIIDFVSIIPFYATLAVDTKEEESEDIENMGK 287

  Fly   372 YTGLLEAFSIVRIMRLFKLTRHSPGLRILIHTFKASAKELTLLVFFLVLGIVFFASLAYYAEKLQ 436
            ...:|.   ::||.|:.||.|||.|||.|..|.:.|..|:.||:.||.:||..|:.|.|..||  
Human   288 VVQILR---LMRIFRILKLARHSVGLRSLGATLRHSYHEVGLLLLFLSVGISIFSVLIYSVEK-- 347

  Fly   437 DNPDNQFKSIPLGLWWAIVTMTTVGYGDVAPKTYPGMFVGALCALAGVLTIALPVPVIVSNFSMF 501
            |:..:...|||:..|||.::||||||||..|.|..|..:.:.|.:.|:|.:|||:.:|.:.||.:
Human   348 DDHTSSLTSIPICWWWATISMTTVGYGDTHPVTLAGKLIASTCIICGILVVALPITIIFNKFSKY 412

  Fly   502 YSH------TQARSKLPKK 514
            |..      .|.....|:|
Human   413 YQKQKDIDVDQCSEDAPEK 431

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawlNP_001097131.2 BTB 7..99 CDD:197585 35/100 (35%)
BTB_2 7..97 CDD:280393 34/98 (35%)
Ion_trans 307..506 CDD:278921 76/215 (35%)
Ion_trans_2 <449..499 CDD:285168 21/49 (43%)
KCNS3NP_001269357.1 BTB_2 17..116 CDD:280393 34/98 (35%)
BTB 44..122 CDD:197585 26/77 (34%)
Ion_trans 219..417 CDD:278921 77/228 (34%)
Ion_trans_2 329..411 CDD:285168 35/83 (42%)
Selectivity filter. /evidence=ECO:0000250|UniProtKB:P63142 370..375 4/4 (100%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D818306at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
43.820

Return to query results.
Submit another query.