DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shawl and Kcna7

DIOPT Version :9

Sequence 1:NP_001097131.2 Gene:Shawl / 5740840 FlyBaseID:FBgn0085395 Length:937 Species:Drosophila melanogaster
Sequence 2:NP_001102384.1 Gene:Kcna7 / 365241 RGDID:1309632 Length:489 Species:Rattus norvegicus


Alignment Length:572 Identity:187/572 - (32%)
Similarity:251/572 - (43%) Gaps:171/572 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 RIILNVSGIRYETYKATLKKIPATRLSRLTEALANYDPVLNEYFFDRHPGVFTQILNYYRTG--- 67
            |::|||:|:|:||...||.:.|.|.|.........||....|||||||...|..:|.||::|   
  Rat    46 RLVLNVAGLRFETRARTLGRFPDTLLGDPVRRSRFYDGARREYFFDRHRPSFDAVLYYYQSGGRL 110

  Fly    68 --KLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQNTLAILDKLDIENE---KPTE 127
              ..|.|.||    |.||:.|:||.:                     |.|.:|. |:|   .|.|
  Rat   111 RRPAHVPLDV----FLEEVSFYGLGA---------------------AALARLR-EDEGCAVPPE 149

  Fly   128 EQIARLFGFEEALSNGELNCWQRIKPKIWAMFDEPSSSTGAKIVAGMSVFFIFVSVISFCLKTHP 192
            ..:.|                :....::|.:|:.|.||..|:::|.:||..|.||::.|||:|.|
  Rat   150 RPLPR----------------RAFARQLWLLFEFPESSQAARVLAVVSVLVILVSIVVFCLETLP 198

  Fly   193 GFRVDLPSGAHDAHGPGAGGPPHGHDPMGEPPQTHQYHQHSITPPSGSIGPTFRVTNYTSYSSGN 257
            .||       .|...||                                                
  Rat   199 DFR-------DDRDDPG------------------------------------------------ 208

  Fly   258 FTASGQATPIATIKGGQRQRLKRNINGSILNEFIEEKILGHNGRRKHGWIETYGQP-HEAFFYVE 321
                  ..|:|...|....||    |||       ..:.|...|          || ::.||.||
  Rat   209 ------LAPVAAATGSFLARL----NGS-------SPMPGAPSR----------QPFNDPFFVVE 246

  Fly   322 LVCNVWFFIEVIIRLIVSPNLWQFIKSPVNIIDFTATLSFYTDVMQRMGEYTG---------LLE 377
            .:|..||..|:::||...|:...|.|:.:|:|||.|.|.::..:...:....|         :|.
  Rat   247 TLCICWFSFELLVRLAACPSKAVFFKNVMNLIDFVAILPYFVALGTELARQRGVGQPAMSLAILR 311

  Fly   378 AFSIVRIMRLFKLTRHSPGLRILIHTFKASAKELTLLVFFLVLGIVFFASLAYYAEKLQDNPDNQ 442
            ...:||:.|:|||:|||.||:||..|.:||.:||.||:|||.:|:|.|:|..|:||  .|..|..
  Rat   312 VIRLVRVFRIFKLSRHSKGLQILGQTLRASMRELGLLIFFLFIGVVLFSSAVYFAE--VDRADTH 374

  Fly   443 FKSIPLGLWWAIVTMTTVGYGDVAPKTYPGMFVGALCALAGVLTIALPVPVIVSNFSMFYSHTQA 507
            |.|||...|||:||||||||||:||.|..|..||:|||:||||||:|||||||||||.||     
  Rat   375 FTSIPESFWWAVVTMTTVGYGDMAPVTVGGKIVGSLCAIAGVLTISLPVPVIVSNFSYFY----- 434

  Fly   508 RSKLPKKRRRVLPVEQPRRKREPTAPHRGRTNAIKQTPPTG--PGLVAGGVV 557
                               .||......|..:.: .|.|.|  .|...||:|
  Rat   435 -------------------HRETEGEEAGMYSHV-DTQPCGTLEGKANGGLV 466

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawlNP_001097131.2 BTB 7..99 CDD:197585 36/96 (38%)
BTB_2 7..97 CDD:280393 36/94 (38%)
Ion_trans 307..506 CDD:278921 100/208 (48%)
Ion_trans_2 <449..499 CDD:285168 37/49 (76%)
Kcna7NP_001102384.1 BTB_2 47..137 CDD:280393 38/114 (33%)
BTB 47..130 CDD:197585 34/86 (40%)
Ion_trans 228..437 CDD:278921 102/244 (42%)
Ion_trans_2 352..431 CDD:285168 51/80 (64%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D818306at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.820

Return to query results.
Submit another query.