DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shawl and Shaw

DIOPT Version :9

Sequence 1:NP_001097131.2 Gene:Shawl / 5740840 FlyBaseID:FBgn0085395 Length:937 Species:Drosophila melanogaster
Sequence 2:NP_001137782.1 Gene:Shaw / 33599 FlyBaseID:FBgn0003386 Length:619 Species:Drosophila melanogaster


Alignment Length:702 Identity:367/702 - (52%)
Similarity:431/702 - (61%) Gaps:146/702 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDGENRIILNVSGIRYETYKATLKKIPATRLSRLTEALANYDPVLNEYFFDRHPGVFTQILNYYR 65
            ||.|||::|||.|||:|||||||||||||||||||||||||||:|||||||||||||.|:|||||
  Fly    21 MDSENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQVLNYYR 85

  Fly    66 TGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQNTLAILDKLDIENEKPTEEQI 130
            ||||||||||||||||||||||||||||||||||.||:.|||||.|||:||:||::.|||:||::
  Fly    86 TGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWMTYTQHRDTQETLAVLDRLDLDTEKPSEEEL 150

  Fly   131 ARLFGFEEALSNGELNCWQRIKPKIWAMFDEPSSSTGAKIVAGMSVFFIFVSVISFCLKTHPGFR 195
            ||.|||||....|.::.||.:||:||::||||.||..||.:..:|||||.:|::||||||||..|
  Fly   151 ARKFGFEEDYYKGTISWWQEMKPRIWSLFDEPYSSNAAKTIGVVSVFFICISILSFCLKTHPDMR 215

  Fly   196 VDLPSGAHDAHGPGAGGPPHGHDPMGEPPQTHQYHQHSITPPSGSIGPTFRVTNYTSYSSGNFTA 260
            |.:                                                |.|.|         
  Fly   216 VPI------------------------------------------------VRNIT--------- 223

  Fly   261 SGQATPIATIKGGQRQRLKRNINGSILNEFIEEKILGHNGRRKHGWI--ETYGQPHEAFFYVELV 323
                              .:..|||                  :||.  :|....|.||||:|.|
  Fly   224 ------------------VKTANGS------------------NGWFLDKTQTNAHIAFFYIECV 252

  Fly   324 CNVWFFIEVIIRLIVSPNLWQFIKSPVNIIDFTATLSFYTD-VMQRMG---EYTGLLEAFSIVRI 384
            ||.||..|:::|.|.|||.|:||||.|||||:.||||||.| |:||..   |...:||.|||:||
  Fly   253 CNAWFTFEILVRFISSPNKWEFIKSSVNIIDYIATLSFYIDLVLQRFASHLENADILEFFSIIRI 317

  Fly   385 MRLFKLTRHSPGLRILIHTFKASAKELTLLVFFLVLGIVFFASLAYYAEKLQDNPDNQFKSIPLG 449
            ||||||||||.||:|||.||:||||||||||||||||||.||||.||||::|.||.|.|.|||||
  Fly   318 MRLFKLTRHSSGLKILIQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQPNPHNDFNSIPLG 382

  Fly   450 LWWAIVTMTTVGYGDVAPKTYPGMFVGALCALAGVLTIALPVPVIVSNFSMFYSHTQARSKLPKK 514
            ||||:||||||||||:|||||.|||||||||||||||||||||||||||:|:|||||||:|||||
  Fly   383 LWWALVTMTTVGYGDMAPKTYIGMFVGALCALAGVLTIALPVPVIVSNFAMYYSHTQARAKLPKK 447

  Fly   515 RRRVLPVEQPRRKREPTAPHRGRTNAIKQTPPTGPGLVAGGVVPVGAGGPGLGGHA--VGHSAAG 577
            |||||||||||:.|.|.||                    |||  .|.|.||.|.|:  :|....|
  Fly   448 RRRVLPVEQPRQPRLPGAP--------------------GGV--SGCGTPGSGPHSGPMGSGGTG 490

  Fly   578 APMF----KDAFGGAKIGTVNVN--GVNVIGLHPAQRTTTTMAMAMNEAD-----PTPMSALTYQ 631
            ....    ||......:..:...  |.:::.:.|........|:||.:..     |||::|    
  Fly   491 PRRMNNKTKDLVSPKSVAQLFAGPLGASIVAMSPRTMLDLNPALAMGKPTFQPRIPTPLAA---- 551

  Fly   632 VPMLQPTPTPAHSHGHAHGHAHGLGPASAAMTSSASLTGS-AASAAVATAAA 682
                 ..|.|..|.|..  .|.|:|..||...:||....: ..|.||:|.|:
  Fly   552 -----TPPPPVSSAGGM--TASGIGTTSATGATSAPQPATPLPSIAVSTTAS 596

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawlNP_001097131.2 BTB 7..99 CDD:197585 84/91 (92%)
BTB_2 7..97 CDD:280393 82/89 (92%)
Ion_trans 307..506 CDD:278921 149/204 (73%)
Ion_trans_2 <449..499 CDD:285168 46/49 (94%)
ShawNP_001137782.1 BTB 27..125 CDD:197585 88/97 (91%)
BTB_2 27..117 CDD:280393 82/89 (92%)
Ion_trans 244..439 CDD:278921 147/194 (76%)
Ion_trans_2 355..429 CDD:285168 62/73 (85%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 250 1.000 Domainoid score I2066
eggNOG 1 0.900 - - E1_COG2126
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 460 1.000 Inparanoid score I1537
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D22145at7147
OrthoFinder 1 1.000 - - FOG0000990
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11537
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
87.970

Return to query results.
Submit another query.