DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shawl and Kcng1

DIOPT Version :10

Sequence 1:NP_001097131.2 Gene:Shawl / 5740840 FlyBaseID:FBgn0085395 Length:937 Species:Drosophila melanogaster
Sequence 2:NP_001100015.1 Gene:Kcng1 / 296395 RGDID:631416 Length:514 Species:Rattus norvegicus


Alignment Length:554 Identity:150/554 - (27%)
Similarity:235/554 - (42%) Gaps:171/554 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 DGENRIILNVSGIRYETYKATLKKIPATRLSRLTEALANYDPVL----------NEYFFDRHPGV 56
            |...:||:||.||:|.....||.:.|.|||.:| :|..|:|.:|          ||:||||:||.
  Rat    60 DRRRQIIINVGGIKYSLPWTTLDEFPLTRLGQL-KACTNFDDILSVCDDYDVTCNEFFFDRNPGA 123

  Fly    57 FTQILNYYRTGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWSTY---------SIHRDTQNTL 112
            |..||.:.|.|||....::|...|:|||.:||:..:.::.||...|         .:.|:.:.  
  Rat   124 FGTILTFLRAGKLRLLREMCALSFQEELLYWGIAEDHLDGCCKRRYLQKIEEFAEMMEREDEE-- 186

  Fly   113 AILDKLDIENEKPTEEQIARLFGFEEALSNGELN-CWQRIKPKIWAMFDEPSSSTGAKIVAGMSV 176
            ..||..|.|:|.|             :.|.|.|: |.:|::.    |.::|.|....|:.|.:||
  Rat   187 EALDSEDQESEGP-------------STSEGRLSRCMRRLRD----MVEKPHSGLPGKVFACLSV 234

  Fly   177 FFIFVSVISFCLKTHPGFRVDLPSGAHDAHGPGAGGPPHGHDPMGEPPQTHQYHQHSITPPSGSI 241
            .|:.|:.::..:.|.|..|.:                                            
  Rat   235 LFVTVTAVNLSVSTLPSLREE-------------------------------------------- 255

  Fly   242 GPTFRVTNYTSYSSGNFTASGQATPIATIKGGQRQRLKRNINGSILNEFIEEKILGHNGRRKHGW 306
                             ...||.:.:.                             ||       
  Rat   256 -----------------EEQGQCSQMC-----------------------------HN------- 267

  Fly   307 IETYGQPHEAFFYVELVCNVWFFIEVIIRLIVSPNLWQFIKSPVNIIDFTATLSFYTDVM----- 366
                      .|.||.||..||.:|.::|.|.:|:.:.|::||:.:||..|.|.:|..::     
  Rat   268 ----------VFIVESVCVGWFSLEFLLRFIQAPSKFAFLRSPLTLIDLVAILPYYVTLLVDGAA 322

  Fly   367 -QRMGEYTG---------LLEAFSIVRIMRLFKLTRHSPGLRILIHTFKASAKELTLLVFFLVLG 421
             .|....||         :|.....:||:.:.:|.|||.||:.|..|.:...:|..||:.||.:.
  Rat   323 SSRRKPSTGNSYLDKVGLVLRVLRALRILYVMRLARHSLGLQTLGLTARRCTREFGLLLLFLCVA 387

  Fly   422 IVFFASLAYYAE-KLQDNPDNQFKSIPLGLWWAIVTMTTVGYGDVAPKTYPGMFVGALCALAGVL 485
            |..||.|.|..| ::.|:|  :|.|||...|||::|||||||||:.|::.||..|.....|:|:|
  Rat   388 IALFAPLLYVIENEMADSP--EFTSIPACYWWAVITMTTVGYGDMVPRSTPGQVVALSSILSGIL 450

  Fly   486 TIALPVPVIVSNFSMFYSHTQARSKLPKKRRRVL 519
            .:|.||.      |:|::.:::..:|.:::.|||
  Rat   451 LMAFPVT------SIFHTFSRSYLELKQEQERVL 478

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawlNP_001097131.2 BTB_Shaw-like 4..115 CDD:349723 44/129 (34%)
Ion_trans 307..506 CDD:459842 74/214 (35%)
Kcng1NP_001100015.1 BTB_POZ_KCNG1_2 60..173 CDD:349728 44/113 (39%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 181..205 8/38 (21%)
Ion_trans 227..471 CDD:459842 87/358 (24%)
Selectivity filter. /evidence=ECO:0000250|UniProtKB:P63142 424..429 4/4 (100%)

Return to query results.
Submit another query.