DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shawl and Kcnv2

DIOPT Version :9

Sequence 1:NP_001097131.2 Gene:Shawl / 5740840 FlyBaseID:FBgn0085395 Length:937 Species:Drosophila melanogaster
Sequence 2:NP_001099840.1 Gene:Kcnv2 / 294065 RGDID:1309271 Length:561 Species:Rattus norvegicus


Alignment Length:545 Identity:131/545 - (24%)
Similarity:212/545 - (38%) Gaps:157/545 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LNVSGIRYETYKATLKKIPATRLSRLTEALA---------NYDPVLNEYFFDRHPGVFTQILNYY 64
            :||.|..|:.....|...|.|||.||..:.:         :|:...:||||||.|.||..|.|:|
  Rat   108 VNVGGHSYQLECCELANYPKTRLGRLVTSTSRNCQLGLCDDYEAKTDEYFFDRDPAVFQLIYNFY 172

  Fly    65 RTGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQNTLAILDKLDIENE---KPT 126
            .:|.|....::|...|.|||.:||:.......||...:...||     .:.::|.|:.|   :..
  Rat   173 TSGVLLVRDELCPRSFLEELGYWGVRLKYTPRCCRICFEERRD-----ELSEQLKIQRELRAQAQ 232

  Fly   127 EEQIARLFGFEEALSNGELNCWQRIKPKIWAMFDEPSSSTGAKIVAGMSVFFIFVSVISFCLKTH 191
            .|:...||        .::..:...:.::|.:.::|.||..||.:...|..|:.:||::..|.| 
  Rat   233 AEEAEELF--------RDMRFYGPQRQRLWNLMEKPFSSVAAKAMGVASNLFVLISVVALALNT- 288

  Fly   192 PGFRVDLPSGAHDAHGPGAGGPPHGHDPMGEPPQTHQYHQHSITPPSGSIGPTFRVTNYTSYSSG 256
                  :....|.|. .|.||                                            
  Rat   289 ------VEEMQHQAE-QGTGG-------------------------------------------- 302

  Fly   257 NFTASGQATPIATIKGGQRQRLKRNINGSILNEFIEEKILGHNGRRKHGWIETYGQPHEAFFYVE 321
                                                                  |.|.....:||
  Rat   303 ------------------------------------------------------GDPRPILEHVE 313

  Fly   322 LVCNVWFFIEVIIRLIVSPNLWQFIKSPVNIIDFTATLSFY------------------------ 362
            ::|..:|.:|.::||..:|||.:|.:|.:|::|..|.|.||                        
  Rat   314 MLCVAFFTLEFLLRLASTPNLRRFARSALNLVDLVAILPFYLQLLLECFTSEDQRHGKGSPREHD 378

  Fly   363 TDVMQRMGEYTGLLEAFSIVRIMRLFKLTRHSPGLRILIHTFKASAKELTLLVFFLVLGIVFFAS 427
            .:.:.|:|:...:|....::||.|:.||.|||.|||....|.:...:::..|:.|:.:||..|::
  Rat   379 LETVGRVGKVGQVLRIMRLMRIFRILKLARHSTGLRAFGFTLRQCYQQVGCLMLFITMGIFSFSA 443

  Fly   428 LAYYAEKLQDNPDNQFKSIPLGLWWAIVTMTTVGYGDVAPKTYPGMFVGALCALAGVLTIALPVP 492
            ..|..|  .|.|...|.||....|||.|:::||||||:.|:|:.|.....||...|::...:|:.
  Rat   444 AVYSVE--HDVPGTNFTSILHAWWWAAVSISTVGYGDMYPETHLGRLFAFLCIAFGIILNGMPIS 506

  Fly   493 VIVSNFSMFYSHTQARSKLPKKRRR 517
            ::.:.||.:||..:|......:|.|
  Rat   507 ILYNKFSDYYSKLKAYEYTAIRRER 531

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawlNP_001097131.2 BTB 7..99 CDD:197585 34/98 (35%)
BTB_2 7..97 CDD:280393 33/96 (34%)
Ion_trans 307..506 CDD:278921 68/222 (31%)
Ion_trans_2 <449..499 CDD:285168 17/49 (35%)
Kcnv2NP_001099840.1 BTB 106..197 CDD:197585 32/88 (36%)
BTB 106..197 CDD:295341 32/88 (36%)
Ion_trans 304..520 CDD:278921 67/217 (31%)
Ion_trans_2 433..508 CDD:285168 28/76 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D818306at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.910

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