DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shawl and Kcna5

DIOPT Version :9

Sequence 1:NP_001097131.2 Gene:Shawl / 5740840 FlyBaseID:FBgn0085395 Length:937 Species:Drosophila melanogaster
Sequence 2:NP_037104.1 Gene:Kcna5 / 25470 RGDID:2953 Length:602 Species:Rattus norvegicus


Alignment Length:545 Identity:179/545 - (32%)
Similarity:257/545 - (47%) Gaps:143/545 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 RIILNVSGIRYETYKATLKKIPATRLSRLTEALANYDPVLNEYFFDRHPGVFTQILNYYRT-GKL 69
            |:::|:||:|:||...||.:.|.|.|....:.|..:||:.|||||||:...|..||.||:: |:|
  Rat   112 RVLINISGLRFETQLGTLAQFPNTLLGDPAKRLHYFDPLRNEYFFDRNRPSFDGILYYYQSGGRL 176

  Fly    70 HYPTDVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQNTLAILDKLDIENEKPTEEQIARLF 134
            ..|.:|...:|.:|:.|:.|....:|.        .|:.:..:.       |.|||...      
  Rat   177 RRPVNVSLDVFADEIRFYQLGDEAMER--------FREDEGFIK-------EEEKPLPR------ 220

  Fly   135 GFEEALSNGELNCWQRIKPKIWAMFDEPSSSTGAKIVAGMSVFFIFVSVISFCLKTHPGFRVDLP 199
                       |.:||   ::|.:|:.|.||..|:.:|.:||..|.:|:|:|||:|.|.||.:..
  Rat   221 -----------NEFQR---QVWLIFEYPESSGSARAIAIVSVLVILISIITFCLETLPEFRDERE 271

  Fly   200 SGAHDAHGPGAGGPPHGHDPMGEPPQTHQYHQHSITPPSGSIGPTFRVTNYTSYSSGNFTASGQA 264
            ...|         ||       .|||          ||:.:.|                      
  Rat   272 LLRH---------PP-------VPPQ----------PPAPAPG---------------------- 288

  Fly   265 TPIATIKGGQRQRLKRNINGSILNEFIEEKILGHNGRRKHG------WIETYGQPHEAFFYVELV 323
                             ||||:            :|....|      ...|...|   ||.||..
  Rat   289 -----------------INGSV------------SGALSSGPTVAPLLPRTLADP---FFIVETT 321

  Fly   324 CNVWFFIEVIIRLIVSPNLWQFIKSPVNIIDFTATLSFYTDVMQRMGEY--------------TG 374
            |.:||..|:::|....|:..:|.::.:||||..|...::..:...:.|.              ..
  Rat   322 CVIWFTFELLVRFFACPSKAEFSRNIMNIIDVVAIFPYFITLGTELAEQQPGGGGQNGQQAMSLA 386

  Fly   375 LLEAFSIVRIMRLFKLTRHSPGLRILIHTFKASAKELTLLVFFLVLGIVFFASLAYYAEKLQDNP 439
            :|....:||:.|:|||:|||.||:||..|.:||.:||.||:|||.:|::.|:|..|:||  .||.
  Rat   387 ILRVIRLVRVFRIFKLSRHSKGLQILGKTLQASMRELGLLIFFLFIGVILFSSAVYFAE--ADNH 449

  Fly   440 DNQFKSIPLGLWWAIVTMTTVGYGDVAPKTYPGMFVGALCALAGVLTIALPVPVIVSNFSMFYSH 504
            .:.|.|||...|||:||||||||||:.|.|..|..||:|||:|||||||||||||||||:.|| |
  Rat   450 GSHFSSIPDAFWWAVVTMTTVGYGDMRPITVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY-H 513

  Fly   505 TQARSKLPKKRRRVLPVEQPRRKRE 529
            .:.    ..:.:..|..||..::||
  Rat   514 RET----DHEEQAALKEEQGNQRRE 534

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawlNP_001097131.2 BTB 7..99 CDD:197585 35/92 (38%)
BTB_2 7..97 CDD:280393 35/90 (39%)
Ion_trans 307..506 CDD:278921 96/212 (45%)
Ion_trans_2 <449..499 CDD:285168 37/49 (76%)
Kcna5NP_037104.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 58..107
BTB 113..207 CDD:197585 36/101 (36%)
BTB_2 113..204 CDD:280393 35/98 (36%)
Ion_trans 305..515 CDD:278921 96/215 (45%)
S4-S5 linker. /evidence=ECO:0000250|UniProtKB:P63142 407..420 6/12 (50%)
Ion_trans_2 429..506 CDD:285168 48/78 (62%)
Selectivity filter. /evidence=ECO:0000250|UniProtKB:P63142 469..474 4/4 (100%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 523..543 5/12 (42%)
PDZ-binding 600..602
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

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