DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shawl and Kcnc1

DIOPT Version :9

Sequence 1:NP_001097131.2 Gene:Shawl / 5740840 FlyBaseID:FBgn0085395 Length:937 Species:Drosophila melanogaster
Sequence 2:NP_036988.1 Gene:Kcnc1 / 25327 RGDID:2955 Length:585 Species:Rattus norvegicus


Alignment Length:572 Identity:227/572 - (39%)
Similarity:307/572 - (53%) Gaps:135/572 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 DGENRIILNVSGIRYETYKATLKKIPATRLSRLTEALA----NYDPVLNEYFFDRHPGVFTQILN 62
            |...||::||.|.|::||::||:.:|.|||:.|.|..|    :|||..:|:|||||||||..|||
  Rat     5 DESERIVINVGGTRHQTYRSTLRTLPGTRLAWLAEPDAHSHFDYDPRADEFFFDRHPGVFAHILN 69

  Fly    63 YYRTGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQNTL-----AILDKL--DI 120
            ||||||||.|.||||||:||||.|||:|...||||||.||..|||.:..|     |.||..  |.
  Rat    70 YYRTGKLHCPADVCGPLYEEELAFWGIDETDVEPCCWMTYRQHRDAEEALDSFGGAPLDNSADDA 134

  Fly   121 ENEKP-------TEEQIARLFGFEEALSNGELNCWQRIKPKIWAMFDEPSSSTGAKIVAGMSVFF 178
            :.:.|       .|.::.:.....::........|:|.:|:|||:|::|.||..|:.||..|:||
  Rat   135 DADGPGDSGDGEDELEMTKRLALSDSPDGRPGGFWRRWQPRIWALFEDPYSSRYARYVAFASLFF 199

  Fly   179 IFVSVISFCLKTHPGFRVDLPSGAHDAHGPGAGGPPHGHDPMGEPPQTHQYHQHSITPPSGSIGP 243
            |.||:.:|||:||..|                       :|                        
  Rat   200 ILVSITTFCLETHERF-----------------------NP------------------------ 217

  Fly   244 TFRVTNYTSYSSGNFTASGQATPIATIKGGQRQRLKRNINGSILNEFIEEKILGHNGRRKHGWIE 308
               :.|              .|.|..::.|.:.|..|.                         .|
  Rat   218 ---IVN--------------KTEIENVRNGTQVRYYRE-------------------------AE 240

  Fly   309 TYGQPHEAFF-YVELVCNVWFFIEVIIRLIVSPNLWQFIKSPVNIIDFTATLSFYTDV------M 366
            |     |||. |:|.||.|||..|.::|::..||..:|||:.:|||||.|.|.||.:|      .
  Rat   241 T-----EAFLTYIEGVCVVWFTFEFLMRVVFCPNKVEFIKNSLNIIDFVAILPFYLEVGLSGLSS 300

  Fly   367 QRMGEYTGLLEAFSIVRIMRLFKLTRHSPGLRILIHTFKASAKELTLLVFFLVLGIVFFASLAYY 431
            :...:..|.|.....|||:|:||||||..|||:|.||.:||..|..||:.||.||::.||::.||
  Rat   301 KAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLLLIIFLALGVLIFATMIYY 365

  Fly   432 AEKLQDNPDN-------QFKSIPLGLWWAIVTMTTVGYGDVAPKTYPGMFVGALCALAGVLTIAL 489
            ||::...|::       .||:||:|.|||:|||||:||||:.|:|:.||.||||||||||||||:
  Rat   366 AERIGAQPNDPSASEHTHFKNIPIGFWWAVVTMTTLGYGDMYPQTWSGMLVGALCALAGVLTIAM 430

  Fly   490 PVPVIVSNFSMFYSHTQARSKLPKKRRRVLPVEQPRRKREP-------TAPH 534
            ||||||:||.|:||...|:.|||||:::.:|  :|.:...|       .:||
  Rat   431 PVPVIVNNFGMYYSLAMAKQKLPKKKKKHIP--RPPQLGSPNYCKSVVNSPH 480

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawlNP_001097131.2 BTB 7..99 CDD:197585 59/95 (62%)
BTB_2 7..97 CDD:280393 57/93 (61%)
Ion_trans 307..506 CDD:278921 109/212 (51%)
Ion_trans_2 <449..499 CDD:285168 38/49 (78%)
Kcnc1NP_036988.1 BTB_KCNC1_3 6..122 CDD:349721 68/115 (59%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 121..147 5/25 (20%)
Ion_trans 189..447 CDD:395416 131/351 (37%)
Selectivity filter. /evidence=ECO:0000250 400..405 3/4 (75%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 255 1.000 Domainoid score I1967
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 460 1.000 Inparanoid score I1505
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D331021at33208
OrthoFinder 1 1.000 - - FOG0000990
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11537
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
88.160

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