DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shawl and Kcna10

DIOPT Version :9

Sequence 1:NP_001097131.2 Gene:Shawl / 5740840 FlyBaseID:FBgn0085395 Length:937 Species:Drosophila melanogaster
Sequence 2:NP_001074609.1 Gene:Kcna10 / 242151 MGIID:3037820 Length:511 Species:Mus musculus


Alignment Length:557 Identity:171/557 - (30%)
Similarity:255/557 - (45%) Gaps:153/557 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 DGENRIILNVSGIRYETYKATLKKIPATRLSRLTEALANYDPVLNEYFFDRHPGVFTQILNYYRT 66
            :|..|:|:|::|:|:||...||.:.|.|.|....:.:..:|.:.|||||||:...|..||.||::
Mouse    83 EGNQRVIINIAGLRFETQLRTLNQFPETLLGDREKRMQFFDSMRNEYFFDRNRPSFDGILYYYQS 147

  Fly    67 -GKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQNTLAILDKLDIENEKPTEEQI 130
             ||:..|.:|...:|.:|:.|:.|.|..::.        .|:.:..:.     |.|...||    
Mouse   148 GGKIRRPANVPIDVFADEISFYELGSEAMDQ--------FREDEGFIK-----DPETLLPT---- 195

  Fly   131 ARLFGFEEALSNGELNCWQRIKPKIWAMFDEPSSSTGAKIVAGMSVFFIFVSVISFCLKTHPGFR 195
                           |.:.|   :.|.:|:.|.||:.|:.||.:||..:.:|:..|||:|.|.||
Mouse   196 ---------------NDFHR---QFWLLFEYPESSSAARGVAVVSVLVVVISITIFCLETLPEFR 242

  Fly   196 VDLPSGAHDAHGPGAGGPPHGHDPMGEPPQTHQYHQHSITPPSGSIGPTFRVTNYTSYSSGNFTA 260
            .|                               .....:..||.:       ||.|..|...|| 
Mouse   243 ED-------------------------------RELKVVRDPSIN-------TNKTGLSQTMFT- 268

  Fly   261 SGQATPIATIKGGQRQRLKRNINGSILNEFIEEKILGHNGRRKHGWIETYGQPHEAFFYVELVCN 325
                                                                  :.||.||..|.
Mouse   269 ------------------------------------------------------DPFFMVESTCI 279

  Fly   326 VWFFIEVIIRLIVSPNLWQFIKSPVNIIDFTATLSFYTDVMQRMGEYT----------GLLEAFS 380
            |||..|:::|.:|.|:...|.|:.:||||..:.:.::..::..:.:.|          .:|....
Mouse   280 VWFTFELVLRFVVCPSKTDFFKNIMNIIDIISIIPYFATLITELVQETEPSAQQNMSLAILRIIR 344

  Fly   381 IVRIMRLFKLTRHSPGLRILIHTFKASAKELTLLVFFLVLGIVFFASLAYYAEKLQDNPDNQFKS 445
            :||:.|:|||:|||.||:||..|.|||.:||.||:|||.:|::.|:|..|:||  .|.|::.|.|
Mouse   345 LVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAE--VDEPESHFSS 407

  Fly   446 IPLGLWWAIVTMTTVGYGDVAPKTYPGMFVGALCALAGVLTIALPVPVIVSNFSMFY---SHTQA 507
            ||.|.|||:||||||||||:.|.|..|..||.|||:|||||||||||||||||:.||   :..:.
Mouse   408 IPDGFWWAVVTMTTVGYGDMCPTTPGGKIVGTLCAIAGVLTIALPVPVIVSNFNYFYHRETENEE 472

  Fly   508 RSKLPKKRRRVLPVEQPRRKREPTAPHRGRTNAIKQT 544
            :..:|.:..::|         .......|.|.::.:|
Mouse   473 KPNIPGELDKIL---------NSMGSRMGSTESLNKT 500

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawlNP_001097131.2 BTB 7..99 CDD:197585 33/92 (36%)
BTB_2 7..97 CDD:280393 33/90 (37%)
Ion_trans 307..506 CDD:278921 97/211 (46%)
Ion_trans_2 <449..499 CDD:285168 38/49 (78%)
Kcna10NP_001074609.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 25..44
BTB_2 88..179 CDD:280393 33/98 (34%)
BTB 88..171 CDD:197585 31/82 (38%)
Ion_trans 267..467 CDD:278921 99/256 (39%)
Ion_trans_2 382..458 CDD:285168 48/77 (62%)
Selectivity filter. /evidence=ECO:0000250|UniProtKB:P63142 421..426 4/4 (100%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 489..511 3/12 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.810

Return to query results.
Submit another query.